From 422d3933bccbd9e3cb764af0769cad0d9b7dabb0 Mon Sep 17 00:00:00 2001 From: Julian Stamp Date: Mon, 29 Jan 2024 15:00:40 -0500 Subject: [PATCH] regenie overview --- sgkit/stats/regenie.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/sgkit/stats/regenie.py b/sgkit/stats/regenie.py index 328306845..56b7d7672 100644 --- a/sgkit/stats/regenie.py +++ b/sgkit/stats/regenie.py @@ -766,7 +766,7 @@ def regenie( tests. These estimates are subtracted from trait values and sampling statistics (p-values, standard errors, etc.) are evaluated against the residuals. See the REGENIE preprint [1] for more details. - For a simpler technical overview, see [2] for a detailed description + For a technical overview, see [2, 3] for a detailed description of the individual stages and separate regression models involved. Parameters @@ -875,6 +875,8 @@ def regenie( Nat Genet 53, 1097–1103 (2021). https://doi.org/10.1038/s41588-021-00870-7 [2] - https://glow.readthedocs.io/en/latest/tertiary/whole-genome-regression.html + + [3] - https://rgcgithub.github.io/regenie/overview/ """ if isinstance(covariates, Hashable): covariates = [covariates]