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Dataset preprocessing is slow #12

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shervinea opened this issue Sep 9, 2021 · 0 comments
Open

Dataset preprocessing is slow #12

shervinea opened this issue Sep 9, 2021 · 0 comments
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@shervinea
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Context. At training time, the enzymes' volumes are precomputed with the check_precomputed() method, e.g. for the training set:

enzynet/scripts/architecture/run_enzynet.py

Line 162 in 31d30e0

training_generator.check_precomputed()

Since enzymes' volumes are independent from each other, this task is parallelizable by nature.

Current behavior. This process runs on a single core.

Desired behavior. This process is parallelized as much as possible.
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@shervinea