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NICD-Freyja-outputs- Public
Forked from NICD-Wastewater-Genomics/NICD-Freyja-outputs-HTML BSD 2-Clause "Simplified" License UpdatedMar 10, 2025 -
cdc-covidhub-reports Public
Forked from CDCgov/covidhub-reportsApache License 2.0 UpdatedMar 3, 2025 -
pango-designation Public
Forked from cov-lineages/pango-designationRepository for suggesting new lineages that should be added to the current scheme
Jupyter Notebook Other UpdatedMar 3, 2025 -
nextclade Public
Forked from nextstrain/nextcladeViral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Rust MIT License UpdatedMar 3, 2025 -
cdc-covid19-forecast-hub Public
Forked from CDCgov/covid19-forecast-hubA repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.
R Apache License 2.0 UpdatedMar 3, 2025 -
cdc-wastewater-informed-covid-forecasting Public
Forked from CDCgov/wastewater-informed-covid-forecastingWastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
R Apache License 2.0 UpdatedDec 28, 2024 -
cdc-cfa-respnet-nowcasting-daily Public
Forked from CDCgov/cfa-respnet-nowcasting-dailyR Apache License 2.0 UpdatedNov 26, 2024 -
cdc-covid-vaccine-uptake-2023 Public
Forked from CDCgov/covid-vaccine-uptake-2023R Apache License 2.0 UpdatedNov 22, 2024 -
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cdc-covid19-forecast-hub-archive-fork Public
Forked from CDCgov/covid19-forecast-hub-archive-forkProjections of COVID-19, in standardized format
Jupyter Notebook Other UpdatedMay 1, 2024 -
dms_variants Public
Forked from jbloomlab/dms_variantsAnalyze deep mutational scanning of barcoded variants.
Jupyter Notebook Other UpdatedApr 10, 2024 -
cdc-SARS-CoV-2_Genomic_Surveillance Public
Forked from CDCgov/SARS-CoV-2_Genomic_SurveillanceR Apache License 2.0 UpdatedJun 15, 2023 -
SARS-CoV-2-International Public
Forked from gerstung-lab/SARS-CoV-2-InternationalInternational SARS-CoV-2 surveillance
Jupyter Notebook UpdatedMay 19, 2023 -
cdc-datasets-sars-cov-2 Public
Forked from CDCgov/datasets-sars-cov-2Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
Perl Apache License 2.0 UpdatedMar 23, 2023 -
cdc-usa-sars-cov-2-nextstrain-sets Public
Forked from CDCgov/usa-sars-cov-2-nextstrain-setsPython UpdatedMar 2, 2023 -
cdc-SC2CLIA Public
Forked from CDCgov/SC2CLIAAn SARS-CoV-2 bioinformatics pipeline for CLIA validation using Dr. Erin Young's Cecret StaphB pipeline as a base
Nextflow UpdatedJan 18, 2022