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shoulton-invivyd Follow

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Overview Repositories 16 Projects 0 Packages 0 Stars 0

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NICD-Freyja-outputs- Public
Forked from NICD-Wastewater-Genomics/NICD-Freyja-outputs-

HTML BSD 2-Clause "Simplified" License Updated Mar 10, 2025
cdc-covidhub-reports Public
Forked from CDCgov/covidhub-reports

Apache License 2.0 Updated Mar 3, 2025
pango-designation Public
Forked from cov-lineages/pango-designation

Repository for suggesting new lineages that should be added to the current scheme

Jupyter Notebook Other Updated Mar 3, 2025
nextclade Public
Forked from nextstrain/nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Rust MIT License Updated Mar 3, 2025
cdc-covid19-forecast-hub Public
Forked from CDCgov/covid19-forecast-hub

A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.

R Apache License 2.0 Updated Mar 3, 2025
cdc-wastewater-informed-covid-forecasting Public
Forked from CDCgov/wastewater-informed-covid-forecasting

Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub

R Apache License 2.0 Updated Dec 28, 2024
cdc-cfa-respnet-nowcasting-daily Public
Forked from CDCgov/cfa-respnet-nowcasting-daily

R Apache License 2.0 Updated Nov 26, 2024
cdc-covid-vaccine-uptake-2023 Public
Forked from CDCgov/covid-vaccine-uptake-2023

R Apache License 2.0 Updated Nov 22, 2024
lineages-website Public
Forked from cov-lineages/lineages-website

HTML Updated Oct 16, 2024
cdc-covid19-forecast-hub-archive-fork Public
Forked from CDCgov/covid19-forecast-hub-archive-fork

Projections of COVID-19, in standardized format

Jupyter Notebook Other Updated May 1, 2024
dms_variants Public
Forked from jbloomlab/dms_variants

Analyze deep mutational scanning of barcoded variants.

Jupyter Notebook Other Updated Apr 10, 2024
cdc-SARS-CoV-2_Genomic_Surveillance Public
Forked from CDCgov/SARS-CoV-2_Genomic_Surveillance

R Apache License 2.0 Updated Jun 15, 2023
SARS-CoV-2-International Public
Forked from gerstung-lab/SARS-CoV-2-International

International SARS-CoV-2 surveillance

Jupyter Notebook Updated May 19, 2023
cdc-datasets-sars-cov-2 Public
Forked from CDCgov/datasets-sars-cov-2

Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)

Perl Apache License 2.0 Updated Mar 23, 2023
cdc-usa-sars-cov-2-nextstrain-sets Public
Forked from CDCgov/usa-sars-cov-2-nextstrain-sets

Python Updated Mar 2, 2023
cdc-SC2CLIA Public
Forked from CDCgov/SC2CLIA

An SARS-CoV-2 bioinformatics pipeline for CLIA validation using Dr. Erin Young's Cecret StaphB pipeline as a base

Nextflow Updated Jan 18, 2022

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