adds downloading ref to cellranger script #12
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| name: Render and publish | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| docker: | |
| runs-on: ubuntu-latest | |
| container: geertvangeest/single-cell-rstudio:latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Publish to GitHub Pages (and render) | |
| run: | | |
| quarto publish gh-pages . --no-browser | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # this secret is always available for github actions |