Pinguestigators

Team investigating Metabolic Disorder Mutation Pathogen project for Copenhagen Bioinformatics Hackathon

Step 1

Excel datasets were converted to csv, with a few modifications to ease future analysis:

Name		Name	Last commit message	Last commit date
Latest commit History 30 Commits
Data		Data
Models		Models
DEGs_estimation.R		DEGs_estimation.R
DataPreperationLiver.py		DataPreperationLiver.py
DataPreperationPancreas.py		DataPreperationPancreas.py
LICENSE		LICENSE
LiverDataSio.csv		LiverDataSio.csv
NNModel.py		NNModel.py
PancreasDataSio.csv		PancreasDataSio.csv
README.md		README.md
correlations.py		correlations.py
generate_RNAseq_patient_data.ipynb		generate_RNAseq_patient_data.ipynb
preprocess_data.py		preprocess_data.py
run_models.py		run_models.py
statistical_analysis_of_datasets_preproc_for_R.ipynb		statistical_analysis_of_datasets_preproc_for_R.ipynb
test.txt		test.txt
visualizeRNASeq_liver.csv		visualizeRNASeq_liver.csv
visualizeRNASeq_pancreas.csv		visualizeRNASeq_pancreas.csv