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Python tool for converting files and office documents to Markdown.

HTML 39,441 1,825 Updated Mar 3, 2025

The SIRM-RELION is designed to mitigate the preferred-orientation induced map distortion.

Python 13 3 Updated Aug 7, 2024

The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibod…

Python 66 6 Updated Oct 25, 2024

AlphaFold 3 inference pipeline.

Python 6,154 761 Updated Feb 24, 2025

Zotero is a free, easy-to-use tool to help you collect, organize, annotate, cite, and share your research sources.

JavaScript 11,091 805 Updated Mar 1, 2025

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

Python 499 110 Updated Jan 24, 2025

DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps

C 15 2 Updated Feb 28, 2025

DeepMainmast

C 12 2 Updated Aug 12, 2024

Open source implementation of AlphaFold3

Python 967 84 Updated Oct 7, 2024

An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.

C++ 89 27 Updated Aug 31, 2022

A plugin template for Zotero.

TypeScript 553 122 Updated Mar 3, 2025

Attachment Manager for Zotero

TypeScript 844 14 Updated Feb 8, 2025

The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬

Jupyter Notebook 9,127 1,334 Updated Feb 7, 2025

Truly independent web browser

C++ 33,647 1,404 Updated Mar 4, 2025

Automatic atomic model building program for cryo-EM maps

Python 131 22 Updated Feb 28, 2025

The Persistence of Vision Raytracer (POV-Ray)

C++ 1,396 284 Updated Dec 16, 2024

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

C 1,301 295 Updated Feb 8, 2025

CueMol: Molecular Visualization Framework

C++ 15 8 Updated Feb 23, 2025

Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning

Jupyter Notebook 17 9 Updated Aug 1, 2024
Python 3 Updated Sep 7, 2024

CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

Python 28 4 Updated Oct 14, 2024

DiffModeler: a diffusion model based protein complex structure modeling tool.

Python 49 4 Updated Nov 24, 2024

Emap2sec is a computational tool to identify protein secondary structures

Jupyter Notebook 16 7 Updated Jul 31, 2024

Create a custom GPT for your organization with file search. This demo shows how to create an assistant, set up a vector store, upload and connect files to it, link the store to the assistant, creat…

HTML 10 4 Updated May 23, 2024

インターネット各地に散逸する「パターン認識と機械学習」の解説資料を集約するリポジトリ

264 7 Updated Jul 25, 2016

Fast protein backbone generation with SE(3) flow matching.

Python 247 24 Updated Jul 19, 2024

macromolecular crystallography library and utilities

C++ 247 47 Updated Mar 2, 2025

Notes, articles, rants.

JavaScript 6 Updated Mar 1, 2025

An innovative superfamily of fonts for code

TypeScript 15,379 264 Updated Dec 20, 2024
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