[ENH] move tests for dependency checks and deep_equals to utils module
#758
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| name: Test | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'docs/**' | |
| branches: | |
| - main | |
| - 'release**' | |
| pull_request: | |
| branches: | |
| - main | |
| - 'release**' | |
| paths-ignore: | |
| - 'docs/**' | |
| types: [opened, synchronize] | |
| # Allows workflows to be manually triggered | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| # Needed for the 'trilom/file-changes-action' action | |
| pull-requests: read | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| # Look into replacing this with pre-commit.ci | |
| code-quality: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| - id: file_changes | |
| uses: trilom/[email protected] | |
| with: | |
| output: " " | |
| - name: List changed files | |
| run: echo '${{ steps.file_changes.outputs.files}}' | |
| - uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --files ${{ steps.file_changes.outputs.files}} | |
| - name: Check for missing init files | |
| run: build_tools/fail_on_missing_init_files.sh | |
| shell: bash | |
| test-nodevdeps: | |
| needs: code-quality | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install skbase and dependencies | |
| run: | | |
| python -m pip install . | |
| - name: Run pytest-free tests | |
| run: | | |
| python skbase/_nopytest_tests.py | |
| test-windows: | |
| needs: code-quality | |
| runs-on: windows-2019 | |
| strategy: | |
| fail-fast: false # to not fail all combinations if just one fail | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| channels: anaconda, conda-forge, | |
| - run: conda --version | |
| - run: which python | |
| - name: Fix windows paths | |
| if: ${{ runner.os == 'Windows' }} | |
| run: echo "C:\Program Files (x86)\Windows Kits\10\bin\10.0.18362.0\x64" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| - name: Install conda libpython | |
| run: conda install -c anaconda libpython | |
| - name: Install sktime and dependencies | |
| run: python -m pip install .[test] | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Run tests | |
| run: | | |
| mkdir -p testdir/ | |
| cp setup.cfg testdir/ | |
| python -m pytest | |
| - name: Publish code coverage | |
| uses: codecov/codecov-action@v3 | |
| test-unix: | |
| needs: code-quality | |
| name: Test ${{ matrix.os }}-${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macOS-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| name: Set up conda | |
| with: | |
| # We want to come back and add a previous step (maybe our own github action) | |
| # that will generate the test_env.yml file based on pyproject.toml | |
| # Doing it this way is easier and lets us easily use conda to install everything | |
| # But just have packages listed in pyproject.toml | |
| # activate-environment: test_env | |
| # environment-file: build_tools/test_env.yml | |
| auto-update-conda: true | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| channels: anaconda, conda-forge | |
| channel-priority: true | |
| auto-activate-base: false | |
| activate-environment: test | |
| use-only-tar-bz2: true | |
| # Useful for troubleshooting | |
| - name: Check Conda Setup | |
| shell: bash -l {0} | |
| run: | | |
| conda --version | |
| conda info --envs | |
| which python | |
| which pip | |
| # We want to replace this with the earlier step that | |
| # auto generates a environment.yml (named based on pyproject.toml dep table name) | |
| # that is installed by conda | |
| # The downside of doing it this way is that pip will be greedy | |
| # It could cause some dependencies all ready installed by conda to be | |
| # installed in different verisons that break the installation | |
| # in BaseObject this likelihood is not high, but creating this functionality | |
| # will be a nice value add (and has uses outside of .github actions) | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python -VV | |
| python -m pip install .[test] | |
| # Commented out for now. Turn on once dependencies are shrunk. | |
| # - name: Run Safety security check | |
| # shell: bash -l {0} | |
| # This will scan the installed python environment for all installed dependencies | |
| # including transitive dependencies. Checks for dependencies with known CVEs | |
| # Ignoring CVEs disputed by NumPy devs with IDs 44715, 44716, 44717 | |
| # run: safety check --full-report -i 44715 -i 44716 -i 44717 | |
| # Do not continue on error. Fail the action if safety returns a | |
| # non-zero exit code indicating a vulnerability has been found | |
| # continue-on-error: false | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| python -m pytest | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 |