test.yml

name: Test

on:
  push:
    paths-ignore:
      - 'docs/**'
    branches:
      - main
      - 'release**'
  pull_request:
    branches:
      - main
      - 'release**'
    paths-ignore:
      - 'docs/**'
    types: [opened, synchronize]

  # Allows workflows to be manually triggered
  workflow_dispatch:

permissions:
  contents: read
  # Needed for the 'trilom/file-changes-action' action
  pull-requests: read

concurrency:
  group: ${{ github.ref }}
  cancel-in-progress: true

jobs:
  # Look into replacing this with pre-commit.ci
  code-quality:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
      - id: file_changes
        uses: trilom/file-changes-action@v1.2.4
        with:
          output: " "
      - name: List changed files
        run: echo '${{ steps.file_changes.outputs.files}}'
      - uses: pre-commit/action@v3.0.0
        with:
          extra_args: --files ${{ steps.file_changes.outputs.files}}
      - name: Check for missing init files
        run: build_tools/fail_on_missing_init_files.sh
        shell: bash

  test-nodevdeps:
    needs: code-quality
    runs-on: ubuntu-20.04
    steps:
      - uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.9
      - name: Display Python version
        run: python -c "import sys; print(sys.version)"

      - name: Install skbase and dependencies
        run: |
          python -m pip install .

      - name: Run pytest-free tests
        run: |
          python skbase/_nopytest_tests.py


  test-windows:
    needs: code-quality
    runs-on: windows-2019
    strategy:
      fail-fast: false  # to not fail all combinations if just one fail
      matrix:
        python-version: ['3.8', '3.9', '3.10', '3.11']

    steps:
      - uses: actions/checkout@v3

      - uses: conda-incubator/setup-miniconda@v2
        with:
          auto-update-conda: true
          python-version: ${{ matrix.python-version }}
          channels: anaconda, conda-forge,

      - run: conda --version
      - run: which python

      - name: Fix windows paths
        if: ${{ runner.os == 'Windows' }}
        run: echo "C:\Program Files (x86)\Windows Kits\10\bin\10.0.18362.0\x64" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append

      - name: Install conda libpython
        run: conda install -c anaconda libpython

      - name: Install sktime and dependencies
        run: python -m pip install .[test]

      - name: Show dependencies
        run: python -m pip list

      - name: Run tests
        run: |
          mkdir -p testdir/
          cp setup.cfg testdir/
          python -m pytest

      - name: Publish code coverage
        uses: codecov/codecov-action@v3

  test-unix:
    needs: code-quality
    name: Test ${{ matrix.os }}-${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}
    strategy:
        fail-fast: false
        matrix:
          os: [ubuntu-latest, macOS-latest]
          python-version: ['3.8', '3.9', '3.10', '3.11']
    steps:
      - uses: actions/checkout@v3

      - uses: conda-incubator/setup-miniconda@v2
        name: Set up conda
        with:
          # We want to come back and add a previous step (maybe our own github action)
          # that will generate the test_env.yml file based on pyproject.toml
          # Doing it this way is easier and lets us easily use conda to install everything
          # But just have packages listed in pyproject.toml
          # activate-environment: test_env
          # environment-file: build_tools/test_env.yml
          auto-update-conda: true
          miniconda-version: "latest"
          python-version: ${{ matrix.python-version }}
          channels: anaconda, conda-forge
          channel-priority: true
          auto-activate-base: false
          activate-environment: test
          use-only-tar-bz2: true

      # Useful for troubleshooting
      - name: Check Conda Setup
        shell: bash -l {0}
        run: |
          conda --version
          conda info --envs
          which python
          which pip

      # We want to replace this with the earlier step that
      # auto generates a environment.yml (named based on pyproject.toml dep table name)
      # that is installed by conda
      # The downside of doing it this way is that pip will be greedy
      # It could cause some dependencies all ready installed by conda to be
      # installed in different verisons that break the installation
      # in BaseObject this likelihood is not high, but creating this functionality
      # will be a nice value add (and has uses outside of .github actions)
      - name: Install dependencies
        shell: bash -l {0}
        run: |
          python -VV
          python -m pip install .[test]

      # Commented out for now. Turn on once dependencies are shrunk.
      # - name: Run Safety security check
      #   shell: bash -l {0}
        # This will scan the installed python environment for all installed dependencies
        # including transitive dependencies. Checks for dependencies with known CVEs
        # Ignoring CVEs disputed by NumPy devs with IDs 44715, 44716, 44717
        # run: safety check --full-report -i 44715 -i 44716 -i 44717
        # Do not continue on error. Fail the action if safety returns a
        # non-zero exit code indicating a vulnerability has been found
      #   continue-on-error: false

      - name: Run tests
        shell: bash -l {0}
        run: |
          python -m pytest

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v3