From 394438cedcfe3612fe965554282a09a06942422d Mon Sep 17 00:00:00 2001 From: Markus Weigelt Date: Thu, 24 Aug 2023 18:14:32 +0200 Subject: [PATCH 01/24] Set collection name to OcrdJob --- ocrdmonitor/database/_ocrdjobrepository.py | 1 + 1 file changed, 1 insertion(+) diff --git a/ocrdmonitor/database/_ocrdjobrepository.py b/ocrdmonitor/database/_ocrdjobrepository.py index cfb5eb7..dd07d35 100644 --- a/ocrdmonitor/database/_ocrdjobrepository.py +++ b/ocrdmonitor/database/_ocrdjobrepository.py @@ -23,6 +23,7 @@ class MongoOcrdJob(Document): controller_address: str class Settings: + name = "OcrdJob" indexes = [ pymongo.IndexModel( [ From ead77c453cbb1ddb2ae3a4d7ed3d35afddf38ad9 Mon Sep 17 00:00:00 2001 From: Markus Weigelt Date: Fri, 25 Aug 2023 09:09:15 +0200 Subject: [PATCH 02/24] Increasing the connection default timeout --- ocrdbrowser/_client.py | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/ocrdbrowser/_client.py b/ocrdbrowser/_client.py index 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b55d29e220f878109c02c03e1e3d96ab35257add Mon Sep 17 00:00:00 2001 From: Markus Weigelt Date: Fri, 25 Aug 2023 11:59:17 +0200 Subject: [PATCH 06/24] Handle remote protokoll error --- ocrdbrowser/_client.py | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/ocrdbrowser/_client.py b/ocrdbrowser/_client.py index 17bc7ec..7ff4d0a 100644 --- a/ocrdbrowser/_client.py +++ b/ocrdbrowser/_client.py @@ -5,6 +5,8 @@ from types import TracebackType from typing import AsyncContextManager, Type, cast +import time + import httpx from websockets import client from websockets.exceptions import ConnectionClosed @@ -67,7 +69,7 @@ class HttpBrowserClient: def __init__(self, address: str) -> None: self.address = address - async def get(self, resource: str) -> bytes: + async def get(self, resource: str, retry: bool=True) -> bytes: try: async with httpx.AsyncClient( @@ -75,6 +77,14 @@ async def get(self, resource: str) -> bytes: ) as client: response = await client.get(resource) return response.content + except httpx.RemoteProtocolError as rpe: + if retry : + time.sleep(10) + return await self.get(resource, False) + else : + logging.error(f"Tried to connect to {self.address}") + logging.error(f"Requested resource {resource}") + raise ConnectionError from rpe except Exception as ex: logging.error(f"Tried to connect to {self.address}") logging.error(f"Requested resource {resource}") From ff9c9ff7307b53d635969614771c01c15277cba4 Mon Sep 17 00:00:00 2001 From: Markus Weigelt Date: Fri, 25 Aug 2023 15:01:02 +0200 Subject: [PATCH 07/24] Ignore type exceptions --- ocrdmonitor/database/_initdb.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/ocrdmonitor/database/_initdb.py b/ocrdmonitor/database/_initdb.py index 1a6a5fe..0a44bcf 100644 --- a/ocrdmonitor/database/_initdb.py +++ b/ocrdmonitor/database/_initdb.py @@ -39,10 +39,10 @@ async def init(connection_str: str, force_initialize: bool = False) -> None: __initialized = True connection_str = rebuild_connection_string(connection_str) - client: AsyncIOMotorClient = AsyncIOMotorClient(connection_str) - client.get_io_loop = asyncio.get_event_loop + client: AsyncIOMotorClient = AsyncIOMotorClient(connection_str) # type: ignore + client.get_io_loop = asyncio.get_event_loop # type: ignore await init_beanie( - database=client.ocrd, + database=client.ocrd, # type: ignore document_models=[BrowserProcess, MongoOcrdJob], # type: ignore ) From 2c04de772eb4dc8dd8bb0db37885962a4454e026 Mon Sep 17 00:00:00 2001 From: Markus Weigelt Date: Tue, 29 Aug 2023 12:23:20 +0200 Subject: [PATCH 08/24] Reactor exception handling, using asyncio instead of time and change timeout to 5 secounds --- ocrdbrowser/_client.py | 15 +++++---------- 1 file changed, 5 insertions(+), 10 deletions(-) diff --git a/ocrdbrowser/_client.py b/ocrdbrowser/_client.py index 7ff4d0a..9b7db0b 100644 --- a/ocrdbrowser/_client.py +++ b/ocrdbrowser/_client.py @@ -1,12 +1,11 @@ from __future__ import annotations +import asyncio import logging from types import TracebackType from typing import AsyncContextManager, Type, cast -import time - import httpx from websockets import client from websockets.exceptions import ConnectionClosed @@ -77,15 +76,11 @@ async def get(self, resource: str, retry: bool=True) -> bytes: ) as client: response = await client.get(resource) return response.content - except httpx.RemoteProtocolError as rpe: - if retry : - time.sleep(10) - return await self.get(resource, False) - else : - logging.error(f"Tried to connect to {self.address}") - logging.error(f"Requested resource {resource}") - raise ConnectionError from rpe except Exception as ex: + if isinstance(ex, httpx.RemoteProtocolError) and retry : + await asyncio.sleep(5) + return await self.get(resource, False) + logging.error(f"Tried to connect to {self.address}") logging.error(f"Requested resource {resource}") raise ConnectionError from ex From 53de66dbb42eb4be4d275e596ea559e5b4758abd Mon Sep 17 00:00:00 2001 From: Markus Weigelt Date: Tue, 29 Aug 2023 13:07:30 +0200 Subject: [PATCH 09/24] Update test-ci.yml --- .github/workflows/test-ci.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.github/workflows/test-ci.yml b/.github/workflows/test-ci.yml index c006cea..2c1694c 100644 --- a/.github/workflows/test-ci.yml +++ b/.github/workflows/test-ci.yml @@ -66,3 +66,7 @@ jobs: - name: Testing using pytest run: pdm run pytest tests + + - name: Setup upterm session when failure + if: ${{ failure() && github.event_name == 'workflow_dispatch' }} + uses: lhotari/action-upterm@v1 From d0507d467cee799bea162b68f805fd3a8bfc6ae5 Mon Sep 17 00:00:00 2001 From: Markus Weigelt Date: Tue, 29 Aug 2023 13:35:11 +0200 Subject: [PATCH 10/24] Update _client.py --- ocrdbrowser/_client.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ocrdbrowser/_client.py b/ocrdbrowser/_client.py index 9b7db0b..a46c861 100644 --- a/ocrdbrowser/_client.py +++ b/ocrdbrowser/_client.py @@ -78,7 +78,7 @@ async def get(self, resource: str, retry: bool=True) -> bytes: return response.content except Exception as ex: if isinstance(ex, httpx.RemoteProtocolError) and retry : - await asyncio.sleep(5) + await asyncio.sleep(10) return await self.get(resource, False) logging.error(f"Tried to connect to {self.address}") From fa08c2538b56ac4ae3f220767a4f3e35436c846e Mon Sep 17 00:00:00 2001 From: Markus Weigelt Date: Tue, 29 Aug 2023 13:51:59 +0200 Subject: [PATCH 11/24] Update test-ci.yml --- .github/workflows/test-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test-ci.yml b/.github/workflows/test-ci.yml index 2c1694c..796680d 100644 --- a/.github/workflows/test-ci.yml +++ b/.github/workflows/test-ci.yml @@ -68,5 +68,5 @@ jobs: run: pdm run pytest tests - name: Setup upterm session when failure - if: ${{ failure() && github.event_name == 'workflow_dispatch' }} + if: ${{ failure() }} uses: lhotari/action-upterm@v1 From 7a2ce0ec324b1274760f4917dcf0e77ddef4410a Mon Sep 17 00:00:00 2001 From: Sven Marcus Date: Thu, 10 Aug 2023 13:49:22 +0000 Subject: [PATCH 12/24] Cache workspaces based on last write time --- ocrdbrowser/_cache.py | 29 ++++++++++ ocrdbrowser/_workspace.py | 9 ++-- tests/ocrdbrowser/test_path_cache.py | 54 +++++++++++++++++++ tests/ocrdbrowser/test_workspace.py | 2 +- .../server/test_workspace_endpoint.py | 10 ++-- 5 files changed, 92 insertions(+), 12 deletions(-) create mode 100644 ocrdbrowser/_cache.py create mode 100644 tests/ocrdbrowser/test_path_cache.py diff --git a/ocrdbrowser/_cache.py b/ocrdbrowser/_cache.py new file mode 100644 index 0000000..1e12e84 --- /dev/null +++ b/ocrdbrowser/_cache.py @@ -0,0 +1,29 @@ +from datetime import datetime +from pathlib import Path +from typing import Callable, TypeVar + +T = TypeVar("T") + + +def path_cache(fn: Callable[[Path], T]) -> Callable[[Path], T]: + pathcache: dict[Path, tuple[T, float]] = {} + + def cache(path: Path) -> T: + new_value = fn(path) + pathcache[path] = new_value, path.stat().st_mtime + return new_value + + def wrapper(path: Path) -> T: + if path not in pathcache: + return cache(path) + + value, saved_timestamp = pathcache[path] + saved_datetime = datetime.fromtimestamp(saved_timestamp) + last_modified = datetime.fromtimestamp(path.stat().st_mtime) + + if last_modified > saved_datetime: + return cache(path) + + return value + + return wrapper diff --git a/ocrdbrowser/_workspace.py b/ocrdbrowser/_workspace.py index fac5b3d..b9fd36b 100644 --- a/ocrdbrowser/_workspace.py +++ b/ocrdbrowser/_workspace.py @@ -2,18 +2,19 @@ from pathlib import Path from typing import List -from functools import lru_cache + +from ._cache import path_cache def is_valid(workspace: str) -> bool: return (Path(workspace) / "mets.xml").exists() -@lru_cache(maxsize=1) -def list_all(path: str) -> List[str]: +@path_cache +def list_all(path: Path) -> List[str]: # recursively enumerate METS file paths (excluding .backup subdirs) return [ str(workspace.parent) - for workspace in Path(path).rglob("mets.xml") + for workspace in path.rglob("mets.xml") if not workspace.match(".backup/*/mets.xml") ] diff --git a/tests/ocrdbrowser/test_path_cache.py b/tests/ocrdbrowser/test_path_cache.py new file mode 100644 index 0000000..c142da3 --- /dev/null +++ b/tests/ocrdbrowser/test_path_cache.py @@ -0,0 +1,54 @@ +from pathlib import Path +from typing import Iterator + +import pytest + +from ocrdbrowser._cache import path_cache + +TMPDIR = Path(__file__).parent / "tmpdir" +TMPFILE = TMPDIR / "tmp.txt" + + +@pytest.fixture(autouse=True) +def cleandir() -> Iterator[None]: + TMPDIR.mkdir() + + yield + + TMPFILE.unlink(missing_ok=True) + TMPDIR.rmdir() + + +def test__path_cache_decorator__returns_the_same_result_without_calling_func_again() -> ( + None +): + call_count = 0 + + @path_cache + def fn(path: str | Path) -> int: + nonlocal call_count + call_count += 1 + return call_count + + first = fn(TMPDIR) + second = fn(TMPDIR) + + assert call_count == 1 + assert first == second + + +def test__when_cached_path_changes__calls_func_again() -> None: + call_count = 0 + + @path_cache + def fn(path: str | Path) -> int: + nonlocal call_count + call_count += 1 + return call_count + + fn(TMPDIR) + TMPFILE.touch() + + fn(TMPDIR) + + assert call_count == 2 diff --git a/tests/ocrdbrowser/test_workspace.py b/tests/ocrdbrowser/test_workspace.py index cd5ff5b..d6f92db 100644 --- a/tests/ocrdbrowser/test_workspace.py +++ b/tests/ocrdbrowser/test_workspace.py @@ -18,7 +18,7 @@ def test__a_workspace_without_mets_xml_is_invalid() -> None: def test__list_workspaces__returns_valid_workspaces() -> None: - assert set(workspace.list_all(str(WORKSPACES))) == { + assert set(workspace.list_all(WORKSPACES)) == { str(WORKSPACES / "a_workspace"), str(WORKSPACES / "another workspace"), str(WORKSPACES / "nested" / "workspace"), diff --git a/tests/ocrdmonitor/server/test_workspace_endpoint.py b/tests/ocrdmonitor/server/test_workspace_endpoint.py index 1aa355e..08d2004 100644 --- a/tests/ocrdmonitor/server/test_workspace_endpoint.py +++ b/tests/ocrdmonitor/server/test_workspace_endpoint.py @@ -9,11 +9,9 @@ from httpx import Response from tests.ocrdmonitor.server import scraping -from tests.ocrdmonitor.server.decorators import use_custom_repository from tests.ocrdmonitor.server.fixtures.environment import ( DevEnvironment, Fixture, - RepositoryInitializer, ) from tests.ocrdmonitor.server.fixtures.settings import WORKSPACE_DIR from tests.testdoubles import ( @@ -60,16 +58,14 @@ def test__workspaces__shows_the_workspace_names_starting_from_workspace_root( assert set(texts) == {"a_workspace", "another workspace", "nested/workspace"} -@use_custom_repository +@pytest.mark.asyncio async def test__browse_workspace__passes_full_workspace_path_to_ocrdbrowser( - repository: RepositoryInitializer, + repository_fixture: Fixture, ) -> None: workspace = "a_workspace" full_workspace = str(WORKSPACE_DIR / workspace) browser = BrowserSpy() - fixture = ( - Fixture().with_repository_type(repository).with_browser_type(lambda: browser) - ) + fixture = repository_fixture.with_browser_type(lambda: browser) async with fixture as env: response = open_workspace(env.app, workspace) From 0c47fc65b11ef89a6a9d4049fed5814a042bfdcb Mon Sep 17 00:00:00 2001 From: Sven Marcus Date: Thu, 17 Aug 2023 15:22:41 +0200 Subject: [PATCH 13/24] Attempt to work with system time --- ocrdbrowser/_cache.py | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/ocrdbrowser/_cache.py b/ocrdbrowser/_cache.py index 1e12e84..25b5163 100644 --- a/ocrdbrowser/_cache.py +++ b/ocrdbrowser/_cache.py @@ -1,4 +1,5 @@ from datetime import datetime +import functools from pathlib import Path from typing import Callable, TypeVar @@ -13,15 +14,15 @@ def cache(path: Path) -> T: pathcache[path] = new_value, path.stat().st_mtime return new_value + @functools.wraps(fn) def wrapper(path: Path) -> T: if path not in pathcache: return cache(path) value, saved_timestamp = pathcache[path] - saved_datetime = datetime.fromtimestamp(saved_timestamp) - last_modified = datetime.fromtimestamp(path.stat().st_mtime) + last_modified = path.stat().st_mtime - if last_modified > saved_datetime: + if last_modified > saved_timestamp: return cache(path) return value From 6c63a1fcd266fe14f00b3c22c5e4c4eff91ecb4d Mon Sep 17 00:00:00 2001 From: Markus Weigelt Date: Thu, 17 Aug 2023 16:07:03 +0200 Subject: [PATCH 14/24] Improved implementation to kill a job --- .env.example | 2 ++ docker-compose.yml | 3 ++- init.sh | 1 + ocrdmonitor/server/jobs.py | 24 +++++++++++++++++++++-- ocrdmonitor/server/settings.py | 4 +++- ocrdmonitor/server/templates/base.html.j2 | 2 +- ocrdmonitor/server/templates/jobs.html.j2 | 15 +++++++++----- pdm.lock | 2 +- pyproject.toml | 2 +- 9 files changed, 43 insertions(+), 12 deletions(-) diff --git a/.env.example b/.env.example index 759ef24..584630a 100644 --- a/.env.example +++ b/.env.example @@ -3,6 +3,8 @@ CONTROLLER_PORT_SSH=22 MANAGER_DATA=~/.ssh/id_rsa MANAGER_KEY=~/ +MANAGER_HOST=ocrd-manager +MANAGER_PORT_WEB=4004 MONITOR_IMAGE=ghcr.io/slub/ocrd_monitor:latest MONITOR_HOST=ocrd-monitor diff --git a/docker-compose.yml b/docker-compose.yml index 5d8173a..dd69359 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -17,8 +17,9 @@ services: hostname: ${MONITOR_HOST} environment: - MONITOR_PORT_LOG: ${MONITOR_PORT_LOG} CONTROLLER: "${CONTROLLER_HOST}:${CONTROLLER_PORT_SSH}" + MANAGER_URL: "http://${MANAGER_HOST}:${MANAGER_PORT_WEB}" + MONITOR_PORT_LOG: ${MONITOR_PORT_LOG} MONITOR_DB_CONNECTION: "mongodb://${MONITOR_DB_ROOT_USER:-root}:${MONITOR_DB_ROOT_PASSWORD:-root_password}@ocrd-database:27017" ports: diff --git a/init.sh b/init.sh index 14b5a61..c003376 100755 --- a/init.sh +++ b/init.sh @@ -26,6 +26,7 @@ export OCRD_CONTROLLER__HOST=$CONTROLLER_HOST export OCRD_CONTROLLER__PORT=$CONTROLLER_PORT export OCRD_CONTROLLER__USER=admin export OCRD_CONTROLLER__KEYFILE=~/.ssh/id_rsa +export OCRD_MANAGER__URL=$MANAGER_URL cd /usr/local/ocrd-monitor pdm run monitor diff --git a/ocrdmonitor/server/jobs.py b/ocrdmonitor/server/jobs.py index 5441eab..080b257 100644 --- a/ocrdmonitor/server/jobs.py +++ b/ocrdmonitor/server/jobs.py @@ -4,13 +4,16 @@ from datetime import datetime, timezone from typing import Iterable -from fastapi import APIRouter, Depends, Request, Response +from fastapi import APIRouter, Depends, Request, Response, status +from fastapi.encoders import jsonable_encoder +from fastapi.responses import JSONResponse from fastapi.templating import Jinja2Templates from ocrdmonitor.ocrdcontroller import OcrdController from ocrdmonitor.processstatus import ProcessStatus from ocrdmonitor.protocols import Environment, OcrdJob, Repositories +import httpx @dataclass class RunningJob: @@ -69,8 +72,25 @@ async def jobs( "completed_jobs": sorted( completed, key=lambda x: x.time_terminated or now, - ), + ) }, ) + + @router.get("/kill/{job_pid}", name="jobs.kill") + async def kill( + job_pid: int + ) -> Response: + status_code=status.HTTP_200_OK + message="Job successfully canceled" + try: + async with httpx.AsyncClient() as client: + response = await client.get(environment.settings.ocrd_manager.url + f"/cancel_job/{job_pid}") + response.raise_for_status() + except httpx.HTTPError as exc: + status_code=status.HTTP_409_CONFLICT + message="Job could not be canceled." + print(f"Error response {exc.response.status_code} while requesting {exc.request.url!r}.") + + return JSONResponse(status_code=status_code,content=dict(message = message)) return router diff --git a/ocrdmonitor/server/settings.py b/ocrdmonitor/server/settings.py index 10399fd..b5c88a3 100644 --- a/ocrdmonitor/server/settings.py +++ b/ocrdmonitor/server/settings.py @@ -40,11 +40,12 @@ class OcrdControllerSettings(BaseSettings): port: int = 22 keyfile: Path = Path.home() / ".ssh" / "id_rsa" +class OcrdManagerSettings(BaseSettings): + url: str class OcrdLogViewSettings(BaseSettings): port: int - class OcrdBrowserSettings(BaseSettings): workspace_dir: Path mode: Literal["native", "docker"] = "native" @@ -79,6 +80,7 @@ class Settings(BaseSettings): ocrd_browser: OcrdBrowserSettings ocrd_controller: OcrdControllerSettings ocrd_logview: OcrdLogViewSettings + ocrd_manager: OcrdManagerSettings @classmethod def settings_customise_sources( diff --git a/ocrdmonitor/server/templates/base.html.j2 b/ocrdmonitor/server/templates/base.html.j2 index 5f70ce0..85012b3 100644 --- a/ocrdmonitor/server/templates/base.html.j2 +++ b/ocrdmonitor/server/templates/base.html.j2 @@ -12,7 +12,7 @@