diff --git a/README.md b/README.md index 92f6949..6966577 100644 --- a/README.md +++ b/README.md @@ -5,13 +5,13 @@ to examine the utility of further sequencing, optimize the sequencing depth, or to screen multiple libraries to avoid low complexity samples. -SYSTEM REQUIREMENTS: +SYSTEM REQUIREMENTS ======================================================================== The preseq software will only run on 64-bit UNIX-like operating systems and was developed on both Linux and Mac. The preseq software requires a C++ compiler that supports C++11. -INSTALLATION: +INSTALLATION ======================================================================== ### Installing from a release @@ -67,7 +67,7 @@ make HAVE_HTSLIB=1 all The HTSLib library can be obtained here: http://www.htslib.org/download. -INPUT FILE FORMATS: +INPUT FILE FORMATS ======================================================================== The input to preseq can be in 3 general formats: 1. Mapped read locations in BED or BAM file format. The file should be @@ -84,7 +84,7 @@ The input to preseq can be in 3 general formats: line. These will be made into the "counts histogram" inside preseq right away. -USAGE EXAMPLES: +USAGE EXAMPLES ======================================================================== Each program included in this software package will print a list of options if executed without any command line arguments. Many of the