From 23f3ceca388e5491cb5baee7e32b6be15d785b68 Mon Sep 17 00:00:00 2001 From: Andrew Smith Date: Sun, 4 Sep 2022 18:46:58 -0700 Subject: [PATCH 1/2] Update README.md --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 92f6949..6966577 100644 --- a/README.md +++ b/README.md @@ -5,13 +5,13 @@ to examine the utility of further sequencing, optimize the sequencing depth, or to screen multiple libraries to avoid low complexity samples. -SYSTEM REQUIREMENTS: +SYSTEM REQUIREMENTS ======================================================================== The preseq software will only run on 64-bit UNIX-like operating systems and was developed on both Linux and Mac. The preseq software requires a C++ compiler that supports C++11. -INSTALLATION: +INSTALLATION ======================================================================== ### Installing from a release @@ -67,7 +67,7 @@ make HAVE_HTSLIB=1 all The HTSLib library can be obtained here: http://www.htslib.org/download. -INPUT FILE FORMATS: +INPUT FILE FORMATS ======================================================================== The input to preseq can be in 3 general formats: 1. Mapped read locations in BED or BAM file format. The file should be @@ -84,7 +84,7 @@ The input to preseq can be in 3 general formats: line. These will be made into the "counts histogram" inside preseq right away. -USAGE EXAMPLES: +USAGE EXAMPLES ======================================================================== Each program included in this software package will print a list of options if executed without any command line arguments. Many of the From 3c519127a138451fa1b069ee0e1e1aadcdecbb59 Mon Sep 17 00:00:00 2001 From: Andrew Smith Date: Sun, 4 Sep 2022 18:48:03 -0700 Subject: [PATCH 2/2] Update README.md --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index 6966577..21eca4c 100644 --- a/README.md +++ b/README.md @@ -138,6 +138,10 @@ More data is available in the `additional_data.txt` file in the `data` directory. For an extended write-up on our programs, please read the manual in the `docs` directory. +UPDATES TO VERSION 3.2.0 +======================================================================== +Updates to the repo in preparation for putting preseq in conda + UPDATES TO VERSION 3.1.2 ======================================================================== Two headers were added.