RADMeth: Regression Analysis of Differential Methilation is a software for computing individual differentially methylated sites and genomic regions in whole genome bisulfite sequencing (WGBS) data.
Egor Dolzhenko [email protected] http://smithlabresearch.org/
Before attempting to compile RADMeth please make sure that GNU Scientific Library (http://www.gnu.org/software/gsl/) is installed on your system Alternatively, you can download pre-compiled binaries for either Linux or Mac from http://smithlabresearch.org/software/radmeth/
To compile RADMeth, enter the program's root directory (e.g. radmeth/) and
execute
make
After the compilation, the binaries can be found in radmeth/bin/
Please see the manual, which can be obtained at http://smithlabresearch.org/software/radmeth/
Copyright (C) 2013 University of Southern California and Egor Dolzhenko Andrew D Smith
Authors: Andrew D. Smith and Egor Dolzhenko
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.