Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

optimizations #29

Open
wants to merge 4 commits into
base: main
Choose a base branch
from
Open

optimizations #29

wants to merge 4 commits into from

Commits on May 5, 2021

  1. replace combinegvcfs with faster genomicsdbimport

    knokknok committed May 5, 2021
    Configuration menu
    Copy the full SHA
    8746daf View commit details
    Browse the repository at this point in the history

  2. use strongly recommanded format for hard filtering (https://gatk.broa… 

    …dinstitute.org/hc/en-us/articles/360057440031-VariantFiltration)
    knokknok committed May 5, 2021
    Configuration menu
    Copy the full SHA
    45c247b View commit details
    Browse the repository at this point in the history

  3. switch to faster Bwa-mem2

    knokknok committed May 5, 2021
    Configuration menu
    Copy the full SHA
    8646b6b View commit details
    Browse the repository at this point in the history

  4. fix for snakemake-workflows#27

    knokknok committed May 5, 2021
    Configuration menu
    Copy the full SHA
    e2c998f View commit details
    Browse the repository at this point in the history