v5.12.1

5.12.1 (2025-02-21)

Bug Fixes

• avoid mis-parsing NA reference (REF) alleles in split-call-tables.py (#360) (9643ab9)

v5.12.0

5.12.0 (2025-02-19)

Features

• refactor pangenome mapping (#357) (412e361)

v5.11.1

5.11.1 (2025-02-07)

Bug Fixes

• generalize sorting for pangenome mapped reads (#353) (84b6aed)
• Update datavzrd wrapper (#358) (23bbd86)

v5.11.0

5.11.0 (2025-01-20)

Features

• add option to allow mapping to pangenome (#274) (e86cc81)
• allow setting of custom alignment properties (#346) (2d2a05e)
• support for samples w/ and w/o primers (#344) (7c24fb8)
• Update datavzrd-spells version for boolean spell and add clin_sig spell (#342) (185b2fe)

Bug Fixes

• cache ref data (#348) (0cf0fa8)
• fix datavzrd template for likely pathogenic interpretation (#350) (760f3b3)
• fix filtering primerless reads by pinning rust-script (#339) (ff37174)
• fix short observation plot (#334) (0d8dba7)
• sort order of marked duplicates (#351) (194357b)
• update to varlociraptor 8.5.1 (7cbd077)
• update wrapper versions to fix yte template bug (#349) (d175726)

Performance Improvements

• group calling jobs per patient/sample-group such that they are submitted to the same cluster/cloud nodes in order to save I/O (#338) (aa583d3)

v5.10.1

5.10.1 (2024-10-23)

Bug Fixes

• fix excluding events from the report (#332) (acdd9e3)
• more explicity pinning of varlociraptor version (f66c6a5)
• processing vembrane config (#330) (1629c6d)

v5.10.0

5.10.0 (2024-09-26)

Features

• allow excluding events from the report (#324) (b5d1966)

Bug Fixes

• fix testcase rule for remote storage (#322) (1f2f3b2)
• update to latest datavzrd and vembrane (#329) (6c5cc97)

v5.9.0

5.9.0 (2024-08-26)

Features

• add maftools output (#297) (e749260)

v5.8.4

5.8.4 (2024-08-13)

Bug Fixes

• make the aux-files example use the existing ANN field SYMBOL (#320) (0dd0c36)

v5.8.3

5.8.3 (2024-07-24)

Miscellaneous Chores

• release 5.8.3 (2fc6a49)
• update datavzrd wrapper: #316

v5.8.2

5.8.2 (2024-07-18)

Bug Fixes

• update to latest datavzrd (b8bd1fc)