You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello,
I'm trying to run using my own GWAS summary statistics. My input file is below
When I reach data.process_gwas_file(), I get KeyError: 'rs62513865'. Do you know why this might be?
I have also tried to use another input file with just CHR, SNP, P, and N, but run into KeyError: 'BETA' when i run data.process_gwas_file(). Your documentation says I only require these 4 columns. Do you know what the issue is for this?
Hello,
I'm trying to run using my own GWAS summary statistics. My input file is below
When I reach data.process_gwas_file(), I get KeyError: 'rs62513865'. Do you know why this might be?
I have also tried to use another input file with just CHR, SNP, P, and N, but run into KeyError: 'BETA' when i run data.process_gwas_file(). Your documentation says I only require these 4 columns. Do you know what the issue is for this?
Finally, I don't seem to have an alternate allele frequency in my summary stats (https://pgc.unc.edu/for-researchers/download-results/ - I'm looking at the latest ED results). Will this be a problem?
The text was updated successfully, but these errors were encountered: