From 8928efb9bb5db81471a49a143b1ff722b1059923 Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 6 Nov 2024 13:15:45 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20software?= =?UTF-8?q?-gardening/almanack@47cdce0bc56c8c70d0ddc214ee8f7e71a87bf5c6=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- searchindex.js | 2 +- .../gather-software-information-entropy.html | 142 ++++++++++-------- ...visualize-pubmed-repo-sofware-entropy.html | 28 ++-- software-gardening-almanack.pdf | Bin 1977163 -> 1977163 bytes 4 files changed, 92 insertions(+), 80 deletions(-) diff --git a/searchindex.js b/searchindex.js index 55cb3145..c2532167 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"Acknowledgements": [[4, "acknowledgements"]], "Acknowledgments": [[2, "acknowledgments"]], "Active garden map(s)": [[2, "active-garden-map-s"]], "Attribution": [[0, "attribution"]], "Automated CI/CD with GitHub Actions": [[0, "automated-ci-cd-with-github-actions"]], "Code of conduct": [[0, "code-of-conduct"]], "Contributing": [[0, null]], "Data Extraction": [[6, "data-extraction"]], "Development": [[0, "development"]], "Development Tasks": [[0, "development-tasks"]], "Ethos": [[2, "ethos"]], "Garden Circle": [[1, null]], "Garden Lattice": [[3, null]], "Garden Map": [[2, null]], "Getting started": [[0, "getting-started"]], "Git commit messages": [[0, "git-commit-messages"]], "How do GitHub Forks, software entropy, and time relate?": [[6, "how-do-github-forks-software-entropy-and-time-relate"]], "How do GitHub Stars, software entropy, and time relate?": [[6, "how-do-github-stars-software-entropy-and-time-relate"]], "How do software entropy, time, and GitHub issues relate to one another?": [[6, "how-do-software-entropy-time-and-github-issues-relate-to-one-another"]], "How is software entropy different across primary languages?": [[6, "how-is-software-entropy-different-across-primary-languages"]], "Inspiration": [[4, "inspiration"]], "Linting": [[0, "linting"]], "Motivation": [[4, "motivation"]], "Overview": [[0, "overview"]], "Process": [[0, "process"]], "PubMed GitHub Repositories Analysis": [[5, "pubmed-github-repositories-analysis"]], "PubMed article GitHub repository software information entropy": [[5, null]], "Pull requests": [[0, "pull-requests"]], "Quick links": [[0, "quick-links"]], "Release Publishing Process": [[0, "release-publishing-process"]], "Releases": [[0, "releases"]], "Reporting bugs or suggesting enhancements": [[0, "reporting-bugs-or-suggesting-enhancements"]], "Sections": [[2, "sections"]], "Security": [[0, "security"]], "Seed Bank": [[7, null]], "Software Forest": [[8, null]], "Verdant Sundial": [[9, null]], "Version specification process": [[0, "version-specification-process"]], "Version specifications": [[0, "version-specifications"]], "Visualizations": [[2, "visualizations"]], "Visualizing PubMed article GitHub repository software information entropy": [[6, null]], "Welcome": [[4, null]], "We\u2019d love your input": [[2, "we-d-love-your-input"]], "What is the relationship between GitHub Stars and Forks for repositories?": [[6, "what-is-the-relationship-between-github-stars-and-forks-for-repositories"]], "What is the relationship between GitHub Stars and Open Issues for the repositories?": [[6, "what-is-the-relationship-between-github-stars-and-open-issues-for-the-repositories"]], "What languages are used within PubMed article repositories?": [[6, "what-languages-are-used-within-pubmed-article-repositories"]], "Who\u2019s this for?": [[4, "who-s-this-for"]], "Your first code contribution": [[0, "your-first-code-contribution"]]}, "docnames": ["garden-circle/contributing", "garden-circle/garden-circle", "garden-circle/garden-map", "garden-lattice/garden-lattice", "introduction", "seed-bank/pubmed-github-repositories/gather-software-information-entropy", "seed-bank/pubmed-github-repositories/visualize-pubmed-repo-sofware-entropy", "seed-bank/seed-bank", "software-forest/software-forest", "verdant-sundial/verdant-sundial"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinxcontrib.bibtex": 9}, "filenames": ["garden-circle/contributing.md", "garden-circle/garden-circle.md", "garden-circle/garden-map.md", "garden-lattice/garden-lattice.md", "introduction.md", "seed-bank/pubmed-github-repositories/gather-software-information-entropy.ipynb", "seed-bank/pubmed-github-repositories/visualize-pubmed-repo-sofware-entropy.ipynb", "seed-bank/seed-bank.md", "software-forest/software-forest.md", "verdant-sundial/verdant-sundial.md"], "indexentries": {}, "objects": {}, "objnames": {}, "objtypes": {}, "terms": {"": [0, 3, 6, 8], "0": [3, 5, 6, 8], "00": 6, "000": 6, "000000": 6, "000257": 6, "000449": 6, "002": 3, "002924": 6, "003": 8, "01": 6, "011558": 6, "014386": 6, "02": 6, "027122": 6, "03": [3, 6], "04": 6, "05": [3, 6, 8, 9], "06": 6, "06ch11357": 4, "07": 6, "07na27344": 4, "08": 6, "09": 6, "0x7f38cad39760": 5, "1": [3, 5, 6], "10": [3, 5, 6], "100": 9, "101": 5, "1016": 3, "11": [5, 6], "1109": [3, 6], "11153": 6, "11154": 6, "11155": 6, "11156": 6, "11157": 6, "11158": 6, "118683": 6, "12": [3, 6], "121557916": 6, "1253887": 3, "13": 6, "136": 6, "13927": 6, "14": 6, "141": 6, "1476": 6, "15": 6, "153966": 6, "16": [3, 5, 6], "17": [3, 6, 8], "17271": 3, "176469": 6, "178897": 6, "179753": 6, "18": [6, 9], "1842": 3, "1843": 3, "19": 6, "1935": 8, "1996": 8, "1997": 8, "1998": 8, "1gdabbv3": 5, "2": 6, "20": 6, "2003": 3, "2005": 3, "2006": 8, "2007": 6, "2009": 6, "2010": 3, "2013": [3, 9], "2015": [3, 9], "2016": 6, "2018": 6, "2020": [6, 9], "2021": 6, "2022": 6, "2023": [6, 8], "2024": [2, 3, 6, 8, 9], "207621": 6, "21": 6, "22": 6, "2224": 6, "2284": 6, "23": 6, "2327079": 4, "235": 6, "238": 5, "239": 5, "24": 6, "240": 5, "241": 5, "243": 5, "245": 5, "246": 5, "25": [3, 6], "257411": 6, "26": [3, 6], "261": 6, "27": 6, "2755061": 6, "28": 6, "28369246": 6, "29": 6, "3": [3, 5, 6, 8], "30": 6, "30239601": 6, "31": 6, "31st": 6, "32264": 6, "325": 5, "326": 5, "327": 5, "328": 5, "329": 5, "33": 6, "34765090": 6, "356": 3, "35814290": 6, "36": 6, "36448683": 6, "36741395": 6, "368": 6, "37": 6, "37018301": 6, "37039": 6, "37129540": 6, "38": 6, "39": 6, "4": [3, 6, 8], "40": 6, "400": 6, "41": 6, "419": 5, "43": 0, "44": 6, "441": 3, "45": 6, "47": 6, "49": [5, 6], "5": 6, "50": 5, "500": 5, "5070510": 6, "51": 5, "52": 5, "53": [5, 6, 8], "54": 6, "57131": 3, "58": 6, "59": 6, "627": 5, "628": 5, "629": 5, "630": 5, "65375": 6, "654": [3, 8], "663": 3, "68889": 6, "69014": 6, "692": 8, "700": 6, "78": 6, "8": [6, 8], "8046743": 6, "84": 8, "867622": 6, "88": 6, "883": 6, "9": 3, "930031": 8, "945852": 8, "96": 5, "978": [3, 8], "9780816689231": 9, "98": 5, "990": 6, "A": [0, 5, 8], "As": [8, 9], "At": 4, "Be": 3, "By": 0, "For": 0, "If": 0, "In": [2, 5, 6, 9], "It": [2, 3, 9], "Its": 4, "No": [4, 6], "On": 0, "The": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9], "These": [0, 3, 4, 8, 9], "To": [0, 3], "_base": 5, "_cond": 5, "_flag": 5, "_transfer_progress_cb": 5, "abil": 0, "abl": 0, "about": [0, 2, 6, 9], "abov": [0, 4], "abstract": [5, 6, 8], "ac": 3, "ac02": 4, "ac52": 4, "accept": 9, "access": [0, 9], "accid": 8, "accumul": 4, "accuraci": 0, "achiev": 8, "acknowledg": 3, "acquir": 5, "across": 2, "act": [0, 3, 9], "action": 9, "activ": 0, "ad": 0, "ada": 3, "adapt": [8, 9], "add": 0, "addit": 0, "administr": 4, "advanc": [3, 4], "adventiti": 8, "after": [0, 9], "ag": 6, "against": [3, 4], "aggreg": 5, "agricultur": 4, "ahm": 6, "akerman": 6, "alexandra": 4, "algebra": 3, "algorithm": 3, "all": [0, 2, 3, 4, 6, 8, 9], "almanack": [0, 1, 2, 4, 5, 6, 7], "almost": 6, "alongsid": 0, "alreadi": 0, "also": [0, 3, 4, 8, 9], "am": 8, "amidst": 9, "among": [4, 8, 9], "ampl": 6, "an": [0, 2, 3, 4, 8, 9], "analysi": [2, 8], "analyt": 3, "analyz": 5, "anatskii": 6, "ani": [0, 2, 4, 5], "anl": 4, "annal": 3, "annual": 9, "anoth": 0, "anticip": 9, "antlr": 6, "anyon": 4, "api": [5, 6], "appear": 4, "append": 5, "appli": [0, 4, 6, 7], "apprenticeship": 3, "appropri": [0, 8], "approv": 0, "ar": [0, 2, 4, 5, 8, 9], "archeologi": 9, "architectur": 8, "archiv": 6, "area": 7, "arnaboldi": 6, "around": 3, "arrigoni": 6, "arthur": 4, "articl": [8, 9], "article_d": 6, "artifact": [8, 9], "arun": 3, "as_complet": 5, "ash": 4, "ashesh": 3, "ask": 0, "aspir": 4, "assess": 9, "assist": [0, 2, 8], "associ": [0, 1, 2, 7, 8], "audrei": 3, "author": 6, "autom": 2, "automat": 0, "avail": 0, "avoid": [0, 2, 6, 8], "awai": 9, "awaken": 8, "awar": 9, "babbag": 3, "balanc": 8, "ball": 8, "bamboo": 3, "bar": 6, "bardini": 6, "bark": 9, "barrier": 4, "base": [0, 4], "basi": 4, "batch": 5, "batch_filenam": 5, "batch_numb": 5, "batch_result": 5, "batch_siz": 5, "batch_url": 5, "bc": 6, "beauti": 3, "becaus": [3, 8], "becom": 9, "befor": 0, "began": 0, "begin": 9, "behavior": [0, 9], "being": 3, "believ": 3, "belong": 0, "below": [0, 2, 6], "beltram": 6, "beneath": 4, "benefici": 4, "benefit": [0, 8, 9], "benjamin": 3, "benso": 6, "best": [0, 4], "better": [4, 6], "between": [0, 5], "big": [0, 2, 8], "bite": 0, "bloom": 9, "board": 4, "book": [0, 3, 9], "both": [0, 3, 4, 8], "bottom": 6, "bow": 3, "box": 6, "braid": 3, "branch": 0, "break": 4, "breath": 8, "brian": [3, 8], "bring": [2, 9], "brittl": 4, "bssw": 2, "bu": 6, "bug": 4, "build": [0, 4, 9], "built": [2, 3], "burn": 3, "burnett": 8, "burnout": 3, "bustool": 6, "busz": 6, "busz_pap": 6, "button": 2, "b\u00f6nisch": 6, "c": 6, "cach": 5, "call": [2, 5, 8], "callback": 5, "can": [0, 2, 3, 4, 8, 9], "canada": 6, "canopi": 2, "capabl": 0, "capac": 8, "carbon": 3, "care": [3, 8], "carlo": 6, "carolyn": 9, "cascad": 9, "case": [0, 8], "cast": 9, "caus": 3, "celebr": 3, "cell": [5, 6, 9], "cffi": 5, "challeng": 3, "chang": [0, 4, 6, 8, 9], "chao": 8, "chart": 6, "check": 0, "chelsea": 8, "chines": 3, "chronicl": 3, "chronolog": 9, "chronologi": 9, "cite": 4, "clarif": 0, "clarifi": 0, "clone": 0, "cl\u00e9ment": 4, "co": 8, "coc": 0, "code": [5, 6, 8, 9], "cognit": 8, "collabor": [3, 4], "collect": [0, 3], "color": 6, "color_continuous_scal": 6, "column": [5, 6], "com": [3, 6], "comic": 4, "command": 0, "comment": 0, "commit": [3, 5, 6], "common": [0, 2, 3, 8, 9], "commun": [0, 2], "complet": 5, "complex": [4, 6], "compon": 8, "compos": 5, "compress": 6, "comput": [3, 4, 5], "concept": [3, 7, 8], "concurr": 5, "condit": 5, "confer": 6, "config": 0, "connect": [3, 4, 8], "conserv": [3, 8, 9], "consid": [4, 8], "constant": 8, "consum": 3, "contain": [0, 5, 6], "contempl": 9, "content": [0, 2, 4, 6, 7], "context": 6, "continu": [4, 9], "contract": 4, "contribut": [1, 2, 4], "contributor": 0, "convolut": 6, "correspond": 5, "count": 6, "countingisalmost": 6, "coupl": [3, 4, 8], "cover": 9, "coverag": 0, "craft": [4, 8], "creat": [0, 2, 4, 5, 6, 8], "creation": [2, 3], "creativ": 9, "cultiv": [3, 4, 8], "curat": 8, "current": [5, 8], "cycl": 4, "d": [5, 8], "da": [3, 6], "dai": [3, 5, 6], "data": [0, 2, 5, 9], "datafram": 5, "dataset": [5, 6], "date": [5, 6], "daunt": [0, 8], "de": [4, 8], "decai": 4, "decid": 0, "deep": 6, "deeper": 3, "deepli": 0, "def": 5, "default": 6, "defin": [0, 4], "delic": 4, "demand": 8, "demonstr": [7, 8], "dendronchronologi": 9, "dens": 8, "depart": 4, "depend": [0, 4], "depict": 9, "deploi": 0, "deriv": 6, "describ": 0, "descript": [0, 2], "design": [4, 8], "destroi": 4, "detail": 2, "detect": 6, "determin": [5, 6], "dev": 0, "develop": [2, 3, 4, 8], "devic": 0, "df": [5, 6], "df_result": 5, "dgcddg": 6, "di": 6, "diagram": 8, "dict": 6, "differ": [0, 2, 9], "difficulti": 3, "dimens": [8, 9], "dimension": 8, "direct": 3, "directli": 0, "directori": [0, 6], "discov": 8, "discoveri": 4, "discuss": [0, 4], "distinct": 9, "distinguish": 0, "distribut": 0, "divers": 4, "divid": [6, 9], "do": [0, 4, 8, 9], "document": [0, 3, 4, 6, 9], "doe": [0, 4], "doi": [3, 6], "done": 2, "dormanc": 9, "down": 3, "draft": 0, "drafter": 0, "drew": 2, "drift": 0, "dropna": 6, "dunamai": 0, "dune": 3, "durat": 6, "dure": [0, 9], "dynam": 0, "e": [0, 5, 6], "each": [0, 2, 4, 5, 9], "earli": 3, "earlier": [0, 4], "echo": 3, "ecolog": [4, 8], "ecologi": [3, 4, 9], "edibl": 8, "edit": 3, "editor": 8, "edward": 6, "effect": [0, 8], "effici": [0, 2, 5], "effort": [0, 3, 4, 9], "einarsson": 6, "ekg": 6, "element": 2, "elfward": 9, "els": [0, 5, 6], "elsevi": 3, "elus": 9, "embodi": 3, "embrac": 4, "emerg": [3, 4, 6, 8], "emiss": 3, "emploi": 8, "enabl": [0, 4], "encourag": [0, 8], "encumbr": 3, "end": [5, 9], "energi": [4, 8], "enforc": 0, "engag": 4, "engin": [3, 4, 6], "enhanc": [3, 4], "enrich": 8, "ensur": 0, "enter": 3, "entireti": 8, "entri": 4, "environ": [0, 8], "environment": 8, "ep": 9, "equal": 8, "error": [0, 4], "etc": [0, 4], "even": 3, "event": 5, "ever": 9, "evolutionari": 8, "evolv": 9, "exampl": [0, 2, 4, 5, 6, 8], "except": 5, "excess": 3, "executor": 5, "exhibit": [0, 8, 9], "exist": [0, 2, 4, 5, 6, 8], "expect": [0, 2, 4], "experi": [0, 3, 4, 9], "explicitli": 4, "explor": [2, 6, 9], "express": 6, "extract": 5, "f": 5, "face": 3, "facilit": 3, "factor": 8, "fals": 6, "farm": [3, 8], "fashion": 4, "fast": 4, "faster": 0, "fate": 3, "fault": 6, "featur": [0, 2], "feel": 0, "fellowship": [2, 4], "fervent": 9, "field": 2, "fig": 6, "fig_languag": 6, "figur": 0, "file": [0, 3, 5, 6, 8, 9], "find": 0, "finish": 5, "finished_futur": 5, "first": [3, 5, 6, 8], "first_commit_d": 5, "fit": 9, "flexibl": 3, "flourish": 3, "flower": [3, 9], "flux": 8, "focus": 5, "follow": [0, 2, 4, 5, 6], "font": 6, "food": 8, "foot": 8, "forest": 3, "forestri": 8, "forgard2": 8, "fork": 0, "form": [4, 6, 8], "format": 6, "forward": 3, "found": [0, 2, 6], "foundat": [3, 4], "franci": 3, "frank": [3, 9], "free": 0, "friendship": 3, "from": [0, 2, 3, 4, 5, 6, 8, 9], "fuegi": 3, "fujisaki": 8, "full": [5, 8], "function": [0, 3, 5], "further": [2, 3, 4], "futur": [0, 3, 4, 5, 8, 9], "g": [0, 5], "gain": 9, "galvan": 4, "garden": [0, 4, 5, 7, 8, 9], "garrison": 6, "gather": [5, 6], "gecco": 3, "genom": 6, "get": 5, "gh": 6, "gif": 8, "gift": 3, "gill": 4, "gimmel": 3, "github": [2, 4], "github_link": [5, 6], "give": [3, 9], "gl1": 3, "gl2": 3, "gl3": 3, "gl4": 3, "gl5": 3, "glimps": 3, "global": 3, "go": [0, 6], "goal": [4, 8], "good": 0, "gotit": 5, "govern": 0, "gradual": 8, "graham": 8, "graml": 9, "grant": 4, "graph": 6, "graph_object": 6, "grate": 0, "green": 8, "ground": 2, "group": 0, "groupbi": 6, "grow": [0, 3, 4, 8, 9], "growth": [3, 4, 8, 9], "gr\u00fcning": 6, "guard": 3, "guarracino": 6, "guid": [0, 2, 4], "guidanc": 4, "guidelin": 0, "guix": 6, "h": 6, "ha": [0, 6], "habitat": 8, "halin": 6, "handbook": 4, "handl": 5, "hard": 9, "harm": 8, "harmon": 3, "hart": 8, "hassan": 6, "have": [0, 4], "haven": 0, "heart": 4, "heat": 3, "height": 6, "help": [0, 2, 3, 4, 8, 9], "hepburn": 3, "herbert": 3, "here": [0, 2, 3, 4], "high": [2, 6, 9], "higher": 3, "highlight": 6, "histogram": 6, "histori": [3, 9], "home": [5, 8], "hook": 0, "hope": 9, "horizont": 6, "hostedtoolcach": 5, "hover_data": 6, "how": [0, 2, 4, 8, 9], "howev": [0, 4, 8], "http": [3, 6, 8, 9], "human": 4, "hyperobject": 9, "h\u00fcgelkultur": 8, "i": [0, 1, 2, 3, 4, 5, 7, 8, 9], "ics": 6, "idea": [0, 4], "ie": 6, "ieee": [3, 6], "ieeexplor": [3, 6], "ignor": 5, "imag": [2, 3, 4, 6, 8, 9], "imagin": 8, "imbal": 3, "impact": 4, "implement": [0, 2], "import": [5, 6], "improv": [0, 4], "includ": [0, 4, 5, 6, 9], "incorpor": 0, "increas": 0, "increment": 5, "index": [0, 5], "indic": 2, "indigen": 3, "indirect": 3, "indirectli": 9, "individu": [0, 3], "infer": 0, "influenc": [3, 4], "inform": [0, 2, 4], "innat": 4, "innov": [4, 8], "insight": [2, 4, 9], "inspir": [2, 3, 6], "instal": 0, "instanc": 9, "instruct": 0, "integr": 4, "intend": 2, "intent": 9, "interconnect": 3, "interdepend": 3, "interest": 0, "intern": [1, 6], "intertwin": [3, 9], "interweav": 3, "intric": 3, "intuit": 0, "invis": 4, "involv": 0, "io": 6, "ipynb": 6, "isakov": 6, "isbn": [3, 8, 9], "isin": 6, "issu": [0, 2, 4], "iter": [5, 8], "its": 4, "itself": 0, "j": [3, 8], "jacquard": 3, "januari": 3, "japan": 8, "java": 6, "javascript": 6, "jiang": 6, "jissen": 8, "job": 0, "joseph": 8, "journei": 3, "jpg": [3, 9], "jump": 4, "junction": 8, "june": 9, "jupyt": 0, "just": [3, 4], "jyoti": 3, "kagawa": 8, "kairo": 9, "kairolog": 9, "kb": 6, "keep": [2, 4], "keyboardinterrupt": 5, "kimmer": 3, "kind": [0, 4, 9], "know": 4, "knowledg": [3, 4], "kri": 8, "kumar": 3, "label": [0, 2], "lal": 3, "lambda": 6, "landscap": 8, "lang": 6, "languag": 8, "language_grouped_data": 6, "laptop": 0, "larg": [0, 5], "last": [0, 5, 6, 9], "later": 3, "latest": 6, "latticework": 3, "layer": [3, 8], "lead": [3, 4], "learn": [2, 8], "least": 0, "leav": 3, "left": 6, "left_on": 6, "len": 5, "lennylv": 6, "let": 4, "level": 2, "leverag": 0, "levi": 6, "li": [6, 9], "lib": 5, "life": 4, "lifecycl": [4, 9], "lifelong": 8, "light": 2, "like": [0, 3, 8, 9], "lim": 6, "limit": 9, "line": [5, 6], "link": [4, 5, 6], "linkinghub": 3, "linsalrob": 6, "list": 0, "live": [3, 8, 9], "livestock": 8, "ll": 4, "llnl": 4, "lloyd": 9, "local": 0, "locat": [0, 5], "lock": 5, "log": [6, 8], "log_i": 6, "log_x": 6, "long": [4, 8], "loom": 3, "loos": [4, 8], "louzoun": 6, "louzounlab": 6, "lovelac": 3, "low": 4, "lyu": 6, "maco": 0, "mahc": 3, "mai": [0, 6, 8, 9], "main": 0, "maintain": [0, 2, 4], "mainten": [1, 4, 8], "major": [0, 2], "make": [0, 4, 8], "make_subplot": 6, "manag": [0, 3, 4, 5, 8], "mani": 3, "manifest": 6, "mank": 6, "manual": 0, "marginal_i": 6, "marginal_x": 6, "mateo": 8, "materi": [4, 9], "matter": 5, "max_work": 5, "maxplanck": 6, "mcdonough": 8, "mcnair": 6, "md": 4, "mean": [4, 8], "measur": 6, "meet": 3, "melst": 6, "menologia": 4, "mention": 0, "merg": [0, 6], "metagen": 6, "method": [0, 4, 5, 6], "mighti": 9, "mileston": 2, "milkwe": 3, "min": 5, "mind": 4, "minim": 8, "minimum": 4, "minn": 3, "minneapoli": [3, 9], "minnesota": 9, "minor": 0, "mirror": 3, "misalign": 8, "mitig": 3, "model": [0, 6], "modif": 0, "modifi": 0, "modular": 4, "moment": 9, "more": [0, 2, 4, 9], "morton": 9, "moss": 9, "most": [0, 4, 5, 6], "most_recent_commit_d": 5, "motion": 4, "move": [0, 6, 9], "much": 0, "mud": 8, "multi": 8, "multidimension": [4, 8], "munro": 4, "museum": 8, "must": [3, 8], "mutual": 3, "mycorrhiz": 8, "mysteri": 8, "name": [5, 6], "nath": 3, "nation": 4, "natur": [3, 8, 9], "necessari": [0, 8], "need": [0, 6], "net": 6, "network": [3, 4, 8], "new": [0, 2, 3, 4, 8, 9], "newcom": 0, "next": 6, "nihonhyoronsya": 8, "nocer": 8, "node": 0, "nogyo": 8, "non": 8, "none": [5, 6], "nor": 4, "normal": [0, 5, 6], "normalized_total_entropi": 5, "note": [0, 3, 5], "notebook": [5, 6], "nourish": [4, 8], "now": 6, "np": 6, "npm": 0, "nsf": 4, "nuclear": 4, "number": [0, 5, 6], "numpi": 6, "nurs": 8, "nurtur": [4, 8], "nvm": 0, "nwn_celegans_": 6, "object": 8, "observ": [6, 9], "octob": 3, "offer": [8, 9], "offic": 4, "onc": 0, "one": [0, 3, 8], "onli": [4, 9], "opac": 6, "open": [0, 4], "oper": [0, 9], "opportun": [8, 9], "opt": 5, "optim": 4, "option": 9, "order": [0, 4], "org": [3, 6, 8, 9], "organ": [2, 3, 8], "orient": [6, 8], "origin": 2, "other": [0, 2, 4, 7, 8, 9], "our": [0, 2, 3, 4, 8, 9], "ourselv": 3, "out": 0, "outlin": 0, "outward": 8, "over": [4, 5, 6], "overheat": 3, "packag": [0, 5], "page": 2, "panda": [5, 6], "pangenom": 6, "paperback": 3, "parallel": 5, "paralysi": 2, "parkour": 6, "parquet": [5, 6], "part": [0, 3], "parti": 6, "particip": [0, 2], "particular": 0, "partit": 6, "pass": 0, "past": 9, "patch": 0, "patienc": 8, "pattern": [3, 4, 6, 8, 9], "paus": 2, "pd": [5, 6], "pdf": 0, "peel": 9, "pend": 5, "penfold": 4, "peopl": [0, 3], "perenni": 9, "perform": [0, 6, 8, 9], "period": [4, 9], "perl": 6, "perpetu": [4, 9], "persist": 3, "person": 3, "perspect": 8, "petal": 2, "philosophi": [4, 9], "phone": 0, "phrase": 0, "pii": 3, "pio": 6, "place": 3, "plan": [1, 4], "planetari": 4, "plant": 3, "pleas": [0, 2, 4], "plot": 2, "plotli": 6, "plotly_whit": 6, "plu": 0, "pmelst": 6, "pmid": 6, "png": 6, "poe": 0, "poet": 0, "poetri": 0, "polici": 0, "politano": 6, "polito": 6, "portabl": 8, "portion": [0, 8], "posit": 4, "possibl": [0, 2], "post": 4, "potenti": 3, "pr": 0, "practic": [0, 2, 4, 8], "practition": 4, "pragmat": 4, "pre": 0, "predict": 6, "prefer": 0, "premium": 3, "prepar": [6, 9], "preparatori": 9, "prerequisit": 4, "present": 9, "press": 9, "pressur": 4, "previou": 2, "primum": 8, "principl": 4, "print": [5, 8], "prior": 9, "procedur": [0, 9], "process": [2, 5], "process_repo_for_analysi": 5, "processpoolexecutor": 5, "program": [4, 8], "progress": 2, "project": [0, 1, 2, 4, 6, 9], "promis": 9, "promot": 9, "properti": 8, "propos": 0, "prosper": 3, "protect": 3, "proverb": 3, "provid": [0, 2, 3, 4, 8], "psevkin": 6, "pub": 8, "public": 2, "pubmed_github_link": 5, "pubmed_github_links_with_github_data": 6, "pudm": 5, "puls": 9, "pursu": 4, "px": 6, "py": 5, "py3": 5, "pyctyomin": 0, "pyenv": 0, "pygit2": 5, "pypi": 0, "pypoetri": 5, "pyproject": 0, "python": [0, 5, 6], "python3": 5, "qualiti": 6, "quan": 6, "queri": [5, 6], "question": 0, "quickli": 4, "rais": 5, "randal": 4, "rang": 5, "rattan": 3, "re": [0, 2], "read": [0, 4, 5, 6], "read_parquet": [5, 6], "reader": 4, "realiti": 9, "realm": 3, "reced": 9, "recent": [5, 6], "recognit": 3, "recommend": 0, "record": 9, "redistribut": 8, "reduc": 0, "refer": [0, 4], "referenc": 0, "region": 8, "relat": 0, "relationship": [0, 3, 4, 8], "remain": 3, "reminisc": 3, "repeat": 0, "replac": 8, "replant": 9, "repo": [5, 6], "repo_count": 5, "repo_url": 5, "repositori": [0, 2], "repository_analysi": 5, "repository_analysis_result": 6, "repository_analysis_results_batch_": 5, "repository_analysis_results_batch_x": 5, "requir": [0, 8, 9], "research": 4, "reset_index": 6, "resili": [3, 4], "resourc": 9, "respons": 3, "restor": 5, "result": 5, "retriev": 3, "return": 5, "review": 0, "rhein": 8, "right": 6, "right_on": 6, "ring": 9, "riron": 8, "rittai": 8, "river": 8, "roadmap": 2, "robert": 8, "robin": 3, "root": 3, "rough": 9, "round": 3, "row": [5, 6], "rug": 6, "run": 0, "rundes_fenster_mit_gitt": 3, "runner": 5, "rustica": 4, "ryan": 6, "s2351989415000281": 3, "sai": 4, "same": [0, 4, 9], "sampl": 6, "save": 5, "sb1": 6, "scape": 8, "scarciti": 9, "scatter": 6, "scdefg": 6, "scenario": [4, 8], "scheme": 6, "scienc": [4, 9], "sciencenew": 9, "scientif": [3, 4], "scientist": 4, "scope": 0, "script": 6, "season": 9, "section": [0, 1, 4, 6, 7], "secur": 4, "see": [0, 2, 4, 8], "seek": [4, 6], "seem": [4, 8], "seemingli": 4, "seen": 3, "self": 5, "semant": 0, "semver": 0, "sens": [4, 9], "sentiment": 3, "separ": 6, "sequenti": 6, "sequest": 3, "seqwish": 6, "seri": 9, "set": 6, "sever": 0, "sf1": 8, "sf2": 8, "sf3": 8, "sf4": 8, "sf5": 8, "sf6": 8, "shadow": 9, "share": [4, 9], "shed": 8, "shi": 4, "short": 0, "should": 0, "show": 6, "signal": 5, "signifi": 3, "similar": [0, 3, 4, 8, 9], "simplifi": 0, "simul": 4, "sinc": 0, "singl": [0, 6], "site": 5, "size": [0, 6], "slow": 8, "small": 0, "smallest": 4, "smooth": 0, "so": [0, 4], "soft": 8, "softwar": [0, 1, 2, 3, 4, 7, 9], "soil": 8, "some": [8, 9], "someon": 0, "sometim": 4, "soon": 0, "sort_valu": 6, "sourc": [0, 3, 4, 8, 9], "space": 4, "specif": 2, "speed": 0, "spokan": 8, "spring": 9, "stabil": 9, "stage": 2, "stappmann": 8, "start": [4, 5, 8], "state": [5, 9], "statu": [0, 2], "step": [0, 8], "sternberg": 6, "stiftung": 8, "store": 5, "stori": [4, 9], "strateg": 2, "strength": 3, "stress": 9, "string": 0, "strive": 0, "structur": [3, 4, 8], "student": 8, "studi": 9, "style": 0, "submit": [0, 3, 5], "subplot": 6, "subset": 6, "suggest": 4, "suit": 8, "sundial_2916_hdr": 9, "supplier": 8, "support": [3, 4], "sure": 0, "surpris": [4, 8], "surround": [4, 8], "sustain": [0, 3, 4], "sweetgrass": 3, "sync": 0, "sysbio": 6, "system": [0, 3, 4, 8, 9], "systemat": 3, "t": [0, 8], "tabl": [0, 6], "tag": 0, "take": 8, "task": 5, "task_nam": 0, "teach": 3, "teacher": 8, "technic": [2, 3], "technologi": [0, 7], "tell": 9, "templat": [0, 6], "tempor": 9, "tend": 3, "tens": 9, "term": [4, 8], "test": [0, 5], "text": 6, "than": 0, "thank": [0, 2], "thei": [2, 3, 4, 5, 8], "them": [2, 8], "theme": 6, "theori": 8, "therefor": 8, "thermal": 6, "thi": [0, 2, 3, 5, 6, 8, 9], "thing": [0, 4, 8], "those": 9, "thread": 5, "three": 8, "through": [0, 2, 3, 4, 5, 8, 9], "time": [0, 4, 5, 8, 9], "time_of_exist": 5, "timelin": 2, "timeout": 5, "timeouterror": 5, "timothi": 9, "titl": 6, "to_parquet": 5, "todo": 2, "togeth": 3, "tokyo": 8, "tolist": 5, "toml": 0, "tomorrow": [3, 9], "tool": [0, 2, 4, 6], "top": 6, "torr": 6, "total": [5, 6], "total_futur": 5, "total_repo": 5, "toward": [3, 4, 8], "toyohiko": 8, "traceback": 5, "track": 2, "tracker": 0, "trade": 3, "tradit": 4, "transfer": 8, "tree": [8, 9], "tripl": 0, "true": [5, 6], "truli": 8, "try": 5, "tug": 8, "type": 0, "u": [2, 3, 4, 8, 9], "unaccept": 0, "unbias": 6, "uncanni": 9, "undeni": 3, "under": [0, 4, 6], "undergo": 9, "undermin": 8, "understand": [3, 4, 6, 9], "understood": 4, "understori": 8, "uneven": 4, "unfamiliar": 8, "unfinish": 5, "uniqu": 9, "uniti": 3, "univers": 9, "unlik": 4, "unpredict": 4, "until": 3, "up": 0, "updat": [0, 2], "update_layout": 6, "uphold": 0, "upon": 3, "upsid": 8, "url": [3, 5, 6, 8, 9], "us": [0, 2, 4, 5], "user": 0, "usernam": 0, "util": 0, "vale": 0, "valu": 5, "vancouv": 6, "vari": 9, "variou": 8, "ve": 0, "veget": 8, "veiga": 6, "vessel": 9, "via": [0, 4], "viabil": 8, "vibranc": [3, 9], "view": [2, 3], "virtualenv": 5, "visibl": [0, 2, 9], "vision": 4, "visit": [3, 6, 8, 9], "vitra": 8, "vivian": 8, "volunt": 8, "vs1": 9, "vs2": 9, "vs3": 9, "vt": 8, "wa": 4, "wai": [4, 8], "wait": 5, "wait_timeout": 5, "waiter": 5, "wall": 3, "want": 0, "wardian": 8, "wast": [0, 8], "we": [0, 3, 4, 6, 8, 9], "weav": 3, "websit": 0, "weil": 8, "welcom": [0, 2], "well": [3, 4, 8], "were": 8, "what": [0, 2, 4, 5, 8, 9], "when": [0, 2, 4], "where": [0, 2, 3, 4, 5, 9], "which": [0, 2, 4, 5, 6, 8, 9], "while": 0, "white": 8, "who": 3, "why": [0, 4], "wide": 2, "width": 6, "wiki": [3, 8, 9], "wikimedia": [3, 8, 9], "william": 8, "willow": 3, "wind": 3, "window": [0, 3], "winter": 9, "wisdom": [3, 9], "within": [0, 2, 4, 5, 8, 9], "without": 4, "wood": 9, "woodi": 3, "word": 8, "work": [0, 2, 3, 4, 8], "workflow": 0, "world": [3, 4, 9], "wormbas": 6, "would": 0, "wrap": 5, "wrapper": 5, "wright": 9, "write": 0, "write_imag": 6, "written": [0, 5], "wu": 6, "www": 9, "w\u00fcstenrot": 8, "x": [5, 6], "x64": 5, "xaxis_titl": 6, "xkcd": 4, "y": 6, "y2k": 8, "yaml": 0, "yanchor": 6, "yaxis_titl": 6, "year": [3, 9], "yesterdai": 9, "yet": 4, "yml": 0, "yoder": 8, "york": 3, "you": [0, 2, 3, 4, 6], "your": 3, "yref": 6, "zhou": 6}, "titles": ["Contributing", "Garden Circle", "Garden Map", "Garden Lattice", "Welcome", "PubMed article GitHub repository software information entropy", "Visualizing PubMed article GitHub repository software information entropy", "Seed Bank", "Software Forest", "Verdant Sundial"], "titleterms": {"": [2, 4], "acknowledg": [2, 4], "across": 6, "action": 0, "activ": 2, "analysi": 5, "anoth": 6, "ar": 6, "articl": [5, 6], "attribut": 0, "autom": 0, "bank": 7, "between": 6, "bug": 0, "cd": 0, "ci": 0, "circl": 1, "code": 0, "commit": 0, "conduct": 0, "contribut": 0, "d": 2, "data": 6, "develop": 0, "differ": 6, "do": 6, "enhanc": 0, "entropi": [5, 6], "etho": 2, "extract": 6, "first": 0, "forest": 8, "fork": 6, "garden": [1, 2, 3], "get": 0, "git": 0, "github": [0, 5, 6], "how": 6, "i": 6, "inform": [5, 6], "input": 2, "inspir": 4, "issu": 6, "languag": 6, "lattic": 3, "link": 0, "lint": 0, "love": 2, "map": 2, "messag": 0, "motiv": 4, "one": 6, "open": 6, "overview": 0, "primari": 6, "process": 0, "publish": 0, "pubm": [5, 6], "pull": 0, "quick": 0, "relat": 6, "relationship": 6, "releas": 0, "report": 0, "repositori": [5, 6], "request": 0, "section": 2, "secur": 0, "seed": 7, "softwar": [5, 6, 8], "specif": 0, "star": 6, "start": 0, "suggest": 0, "sundial": 9, "task": 0, "thi": 4, "time": 6, "us": 6, "verdant": 9, "version": 0, "visual": [2, 6], "we": 2, "welcom": 4, "what": 6, "who": 4, "within": 6, "your": [0, 2]}}) \ No newline at end of file +Search.setIndex({"alltitles": {"Acknowledgements": [[4, "acknowledgements"]], "Acknowledgments": [[2, "acknowledgments"]], "Active garden map(s)": [[2, "active-garden-map-s"]], "Attribution": [[0, "attribution"]], "Automated CI/CD with GitHub Actions": [[0, "automated-ci-cd-with-github-actions"]], "Code of conduct": [[0, "code-of-conduct"]], "Contributing": [[0, null]], "Data Extraction": [[6, "data-extraction"]], "Development": [[0, "development"]], "Development Tasks": [[0, "development-tasks"]], "Ethos": [[2, "ethos"]], "Garden Circle": [[1, null]], "Garden Lattice": [[3, null]], "Garden Map": [[2, null]], "Getting started": [[0, "getting-started"]], "Git commit messages": [[0, "git-commit-messages"]], "How do GitHub Forks, software entropy, and time relate?": [[6, "how-do-github-forks-software-entropy-and-time-relate"]], "How do GitHub Stars, software entropy, and time relate?": [[6, "how-do-github-stars-software-entropy-and-time-relate"]], "How do software entropy, time, and GitHub issues relate to one another?": [[6, "how-do-software-entropy-time-and-github-issues-relate-to-one-another"]], "How is software entropy different across primary languages?": [[6, "how-is-software-entropy-different-across-primary-languages"]], "Inspiration": [[4, "inspiration"]], "Linting": [[0, "linting"]], "Motivation": [[4, "motivation"]], "Overview": [[0, "overview"]], "Process": [[0, "process"]], "PubMed GitHub Repositories Analysis": [[5, "pubmed-github-repositories-analysis"]], "PubMed article GitHub repository software information entropy": [[5, null]], "Pull requests": [[0, "pull-requests"]], "Quick links": [[0, "quick-links"]], "Release Publishing Process": [[0, "release-publishing-process"]], "Releases": [[0, "releases"]], "Reporting bugs or suggesting enhancements": [[0, "reporting-bugs-or-suggesting-enhancements"]], "Sections": [[2, "sections"]], "Security": [[0, "security"]], "Seed Bank": [[7, null]], "Software Forest": [[8, null]], "Verdant Sundial": [[9, null]], "Version specification process": [[0, "version-specification-process"]], "Version specifications": [[0, "version-specifications"]], "Visualizations": [[2, "visualizations"]], "Visualizing PubMed article GitHub repository software information entropy": [[6, null]], "Welcome": [[4, null]], "We\u2019d love your input": [[2, "we-d-love-your-input"]], "What is the relationship between GitHub Stars and Forks for repositories?": [[6, "what-is-the-relationship-between-github-stars-and-forks-for-repositories"]], "What is the relationship between GitHub Stars and Open Issues for the repositories?": [[6, "what-is-the-relationship-between-github-stars-and-open-issues-for-the-repositories"]], "What languages are used within PubMed article repositories?": [[6, "what-languages-are-used-within-pubmed-article-repositories"]], "Who\u2019s this for?": [[4, "who-s-this-for"]], "Your first code contribution": [[0, "your-first-code-contribution"]]}, "docnames": ["garden-circle/contributing", "garden-circle/garden-circle", "garden-circle/garden-map", "garden-lattice/garden-lattice", "introduction", "seed-bank/pubmed-github-repositories/gather-software-information-entropy", "seed-bank/pubmed-github-repositories/visualize-pubmed-repo-sofware-entropy", "seed-bank/seed-bank", "software-forest/software-forest", "verdant-sundial/verdant-sundial"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinxcontrib.bibtex": 9}, "filenames": ["garden-circle/contributing.md", "garden-circle/garden-circle.md", "garden-circle/garden-map.md", "garden-lattice/garden-lattice.md", "introduction.md", "seed-bank/pubmed-github-repositories/gather-software-information-entropy.ipynb", "seed-bank/pubmed-github-repositories/visualize-pubmed-repo-sofware-entropy.ipynb", "seed-bank/seed-bank.md", "software-forest/software-forest.md", "verdant-sundial/verdant-sundial.md"], "indexentries": {}, "objects": {}, "objnames": {}, "objtypes": {}, "terms": {"": [0, 3, 6, 8], "0": [3, 5, 6, 8], "00": 6, "000": 6, "000000": 6, "000257": 6, "000449": 6, "002": 3, "002924": 6, "003": 8, "01": 6, "011558": 6, "014386": 6, "02": 6, "027122": 6, "03": [3, 6], "04": 6, "05": [3, 6, 8, 9], "06": 6, "06ch11357": 4, "07": 6, "07na27344": 4, "08": 6, "09": 6, "0x7f600bf11760": 5, "1": [3, 5, 6], "10": [3, 5, 6], "100": 9, "101": 5, "1016": 3, "11": [5, 6], "1109": [3, 6], "11153": 6, "11154": 6, "11155": 6, "11156": 6, "11157": 6, "11158": 6, "118683": 6, "12": [3, 6], "121557916": 6, "1253887": 3, "13": 6, "136": 6, "13927": 6, "14": 6, "141": 6, "1476": 6, "15": 6, "153966": 6, "16": [3, 5, 6], "17": [3, 6, 8], "17271": 3, "176469": 6, "178897": 6, "179753": 6, "18": [6, 9], "1842": 3, "1843": 3, "19": 6, "1935": 8, "1996": 8, "1997": 8, "1998": 8, "1gdabbv3": 5, "2": 6, "20": 6, "2003": 3, "2005": 3, "2006": 8, "2007": 6, "2009": 6, "2010": 3, "2013": [3, 9], "2015": [3, 9], "2016": 6, "2018": 6, "2020": [6, 9], "2021": 6, "2022": 6, "2023": [6, 8], "2024": [2, 3, 6, 8, 9], "207621": 6, "21": 6, "22": 6, "2224": 6, "2284": 6, "23": 6, "2327079": 4, "235": 6, "238": 5, "239": 5, "24": 6, "240": 5, "241": 5, "243": 5, "245": 5, "246": 5, "25": [3, 6], "257411": 6, "26": [3, 6], "261": 6, "27": 6, "2755061": 6, "28": 6, "28369246": 6, "29": 6, "3": [3, 5, 6, 8], "30": 6, "30239601": 6, "31": 6, "31st": 6, "32264": 6, "325": 5, "326": 5, "327": 5, "328": 5, "329": 5, "33": 6, "34765090": 6, "356": 3, "35814290": 6, "36": 6, "36448683": 6, "36741395": 6, "368": 6, "37": 6, "37018301": 6, "37039": 6, "37129540": 6, "38": 6, "39": 6, "4": [3, 6, 8], "40": 6, "400": 6, "41": 6, "419": 5, "43": 0, "44": 6, "441": 3, "45": 6, "47": 6, "49": [5, 6], "5": 6, "50": 5, "500": 5, "5070510": 6, "51": 5, "52": 5, "53": [5, 6, 8], "54": 6, "57131": 3, "58": 6, "59": 6, "627": 5, "628": 5, "629": 5, "630": 5, "65375": 6, "654": [3, 8], "663": 3, "68889": 6, "69014": 6, "692": 8, "700": 6, "78": 6, "8": [6, 8], "8046743": 6, "84": 8, "867622": 6, "88": 6, "883": 6, "9": 3, "930031": 8, "945852": 8, "96": 5, "978": [3, 8], "9780816689231": 9, "98": 5, "990": 6, "A": [0, 5, 8], "As": [8, 9], "At": 4, "Be": 3, "By": 0, "For": 0, "If": 0, "In": [2, 5, 6, 9], "It": [2, 3, 9], "Its": 4, "No": [4, 6], "On": 0, "The": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9], "These": [0, 3, 4, 8, 9], "To": [0, 3], "_base": 5, "_cond": 5, "_flag": 5, "_transfer_progress_cb": 5, "abil": 0, "abl": 0, "about": [0, 2, 6, 9], "abov": [0, 4], "abstract": [5, 6, 8], "ac": 3, "ac02": 4, "ac52": 4, "accept": 9, "access": [0, 9], "accid": 8, "accumul": 4, "accuraci": 0, "achiev": 8, "acknowledg": 3, "acquir": 5, "across": 2, "act": [0, 3, 9], "action": 9, "activ": 0, "ad": 0, "ada": 3, "adapt": [8, 9], "add": 0, "addit": 0, "administr": 4, "advanc": [3, 4], "adventiti": 8, "after": [0, 9], "ag": 6, "against": [3, 4], "aggreg": 5, "agricultur": 4, "ahm": 6, "akerman": 6, "alexandra": 4, "algebra": 3, "algorithm": 3, "all": [0, 2, 3, 4, 6, 8, 9], "almanack": [0, 1, 2, 4, 5, 6, 7], "almost": 6, "alongsid": 0, "alreadi": 0, "also": [0, 3, 4, 8, 9], "am": 8, "amidst": 9, "among": [4, 8, 9], "ampl": 6, "an": [0, 2, 3, 4, 8, 9], "analysi": [2, 8], "analyt": 3, "analyz": 5, "anatskii": 6, "ani": [0, 2, 4, 5], "anl": 4, "annal": 3, "annual": 9, "anoth": 0, "anticip": 9, "antlr": 6, "anyon": 4, "api": [5, 6], "appear": 4, "append": 5, "appli": [0, 4, 6, 7], "apprenticeship": 3, "appropri": [0, 8], "approv": 0, "ar": [0, 2, 4, 5, 8, 9], "archeologi": 9, "architectur": 8, "archiv": 6, "area": 7, "arnaboldi": 6, "around": 3, "arrigoni": 6, "arthur": 4, "articl": [8, 9], "article_d": 6, "artifact": [8, 9], "arun": 3, "as_complet": 5, "ash": 4, "ashesh": 3, "ask": 0, "aspir": 4, "assess": 9, "assist": [0, 2, 8], "associ": [0, 1, 2, 7, 8], "audrei": 3, "author": 6, "autom": 2, "automat": 0, "avail": 0, "avoid": [0, 2, 6, 8], "awai": 9, "awaken": 8, "awar": 9, "babbag": 3, "balanc": 8, "ball": 8, "bamboo": 3, "bar": 6, "bardini": 6, "bark": 9, "barrier": 4, "base": [0, 4], "basi": 4, "batch": 5, "batch_filenam": 5, "batch_numb": 5, "batch_result": 5, "batch_siz": 5, "batch_url": 5, "bc": 6, "beauti": 3, "becaus": [3, 8], "becom": 9, "befor": 0, "began": 0, "begin": 9, "behavior": [0, 9], "being": 3, "believ": 3, "belong": 0, "below": [0, 2, 6], "beltram": 6, "beneath": 4, "benefici": 4, "benefit": [0, 8, 9], "benjamin": 3, "benso": 6, "best": [0, 4], "better": [4, 6], "between": [0, 5], "big": [0, 2, 8], "bite": 0, "bloom": 9, "board": 4, "book": [0, 3, 9], "both": [0, 3, 4, 8], "bottom": 6, "bow": 3, "box": 6, "braid": 3, "branch": 0, "break": 4, "breath": 8, "brian": [3, 8], "bring": [2, 9], "brittl": 4, "bssw": 2, "bu": 6, "bug": 4, "build": [0, 4, 9], "built": [2, 3], "burn": 3, "burnett": 8, "burnout": 3, "bustool": 6, "busz": 6, "busz_pap": 6, "button": 2, "b\u00f6nisch": 6, "c": 6, "cach": 5, "call": [2, 5, 8], "callback": 5, "can": [0, 2, 3, 4, 8, 9], "canada": 6, "canopi": 2, "capabl": 0, "capac": 8, "carbon": 3, "care": [3, 8], "carlo": 6, "carolyn": 9, "cascad": 9, "case": [0, 8], "cast": 9, "caus": 3, "celebr": 3, "cell": [5, 6, 9], "cffi": 5, "challeng": 3, "chang": [0, 4, 6, 8, 9], "chao": 8, "chart": 6, "check": 0, "chelsea": 8, "chines": 3, "chronicl": 3, "chronolog": 9, "chronologi": 9, "cite": 4, "clarif": 0, "clarifi": 0, "clone": 0, "cl\u00e9ment": 4, "co": 8, "coc": 0, "code": [5, 6, 8, 9], "cognit": 8, "collabor": [3, 4], "collect": [0, 3], "color": 6, "color_continuous_scal": 6, "column": [5, 6], "com": [3, 6], "comic": 4, "command": 0, "comment": 0, "commit": [3, 5, 6], "common": [0, 2, 3, 8, 9], "commun": [0, 2], "complet": 5, "complex": [4, 6], "compon": 8, "compos": 5, "compress": 6, "comput": [3, 4, 5], "concept": [3, 7, 8], "concurr": 5, "condit": 5, "confer": 6, "config": 0, "connect": [3, 4, 8], "conserv": [3, 8, 9], "consid": [4, 8], "constant": 8, "consum": 3, "contain": [0, 5, 6], "contempl": 9, "content": [0, 2, 4, 6, 7], "context": 6, "continu": [4, 9], "contract": 4, "contribut": [1, 2, 4], "contributor": 0, "convolut": 6, "correspond": 5, "count": 6, "countingisalmost": 6, "coupl": [3, 4, 8], "cover": 9, "coverag": 0, "craft": [4, 8], "creat": [0, 2, 4, 5, 6, 8], "creation": [2, 3], "creativ": 9, "cultiv": [3, 4, 8], "curat": 8, "current": [5, 8], "cycl": 4, "d": [5, 8], "da": [3, 6], "dai": [3, 5, 6], "data": [0, 2, 5, 9], "datafram": 5, "dataset": [5, 6], "date": [5, 6], "daunt": [0, 8], "de": [4, 8], "decai": 4, "decid": 0, "deep": 6, "deeper": 3, "deepli": 0, "def": 5, "default": 6, "defin": [0, 4], "delic": 4, "demand": 8, "demonstr": [7, 8], "dendronchronologi": 9, "dens": 8, "depart": 4, "depend": [0, 4], "depict": 9, "deploi": 0, "deriv": 6, "describ": 0, "descript": [0, 2], "design": [4, 8], "destroi": 4, "detail": 2, "detect": 6, "determin": [5, 6], "dev": 0, "develop": [2, 3, 4, 8], "devic": 0, "df": [5, 6], "df_result": 5, "dgcddg": 6, "di": 6, "diagram": 8, "dict": 6, "differ": [0, 2, 9], "difficulti": 3, "dimens": [8, 9], "dimension": 8, "direct": 3, "directli": 0, "directori": [0, 6], "discov": 8, "discoveri": 4, "discuss": [0, 4], "distinct": 9, "distinguish": 0, "distribut": 0, "divers": 4, "divid": [6, 9], "do": [0, 4, 8, 9], "document": [0, 3, 4, 6, 9], "doe": [0, 4], "doi": [3, 6], "done": 2, "dormanc": 9, "down": 3, "draft": 0, "drafter": 0, "drew": 2, "drift": 0, "dropna": 6, "dunamai": 0, "dune": 3, "durat": 6, "dure": [0, 9], "dynam": 0, "e": [0, 5, 6], "each": [0, 2, 4, 5, 9], "earli": 3, "earlier": [0, 4], "echo": 3, "ecolog": [4, 8], "ecologi": [3, 4, 9], "edibl": 8, "edit": 3, "editor": 8, "edward": 6, "effect": [0, 8], "effici": [0, 2, 5], "effort": [0, 3, 4, 9], "einarsson": 6, "ekg": 6, "element": 2, "elfward": 9, "els": [0, 5, 6], "elsevi": 3, "elus": 9, "embodi": 3, "embrac": 4, "emerg": [3, 4, 6, 8], "emiss": 3, "emploi": 8, "enabl": [0, 4], "encourag": [0, 8], "encumbr": 3, "end": [5, 9], "energi": [4, 8], "enforc": 0, "engag": 4, "engin": [3, 4, 6], "enhanc": [3, 4], "enrich": 8, "ensur": 0, "enter": 3, "entireti": 8, "entri": 4, "environ": [0, 8], "environment": 8, "ep": 9, "equal": 8, "error": [0, 4], "etc": [0, 4], "even": 3, "event": 5, "ever": 9, "evolutionari": 8, "evolv": 9, "exampl": [0, 2, 4, 5, 6, 8], "except": 5, "excess": 3, "executor": 5, "exhibit": [0, 8, 9], "exist": [0, 2, 4, 5, 6, 8], "expect": [0, 2, 4], "experi": [0, 3, 4, 9], "explicitli": 4, "explor": [2, 6, 9], "express": 6, "extract": 5, "f": 5, "face": 3, "facilit": 3, "factor": 8, "fals": 6, "farm": [3, 8], "fashion": 4, "fast": 4, "faster": 0, "fate": 3, "fault": 6, "featur": [0, 2], "feel": 0, "fellowship": [2, 4], "fervent": 9, "field": 2, "fig": 6, "fig_languag": 6, "figur": 0, "file": [0, 3, 5, 6, 8, 9], "find": 0, "finish": 5, "finished_futur": 5, "first": [3, 5, 6, 8], "first_commit_d": 5, "fit": 9, "flexibl": 3, "flourish": 3, "flower": [3, 9], "flux": 8, "focus": 5, "follow": [0, 2, 4, 5, 6], "font": 6, "food": 8, "foot": 8, "forest": 3, "forestri": 8, "forgard2": 8, "fork": 0, "form": [4, 6, 8], "format": 6, "forward": 3, "found": [0, 2, 6], "foundat": [3, 4], "franci": 3, "frank": [3, 9], "free": 0, "friendship": 3, "from": [0, 2, 3, 4, 5, 6, 8, 9], "fuegi": 3, "fujisaki": 8, "full": [5, 8], "function": [0, 3, 5], "further": [2, 3, 4], "futur": [0, 3, 4, 5, 8, 9], "g": [0, 5], "gain": 9, "galvan": 4, "garden": [0, 4, 5, 7, 8, 9], "garrison": 6, "gather": [5, 6], "gecco": 3, "genom": 6, "get": 5, "gh": 6, "gif": 8, "gift": 3, "gill": 4, "gimmel": 3, "github": [2, 4], "github_link": [5, 6], "give": [3, 9], "gl1": 3, "gl2": 3, "gl3": 3, "gl4": 3, "gl5": 3, "glimps": 3, "global": 3, "go": [0, 6], "goal": [4, 8], "good": 0, "gotit": 5, "govern": 0, "gradual": 8, "graham": 8, "graml": 9, "grant": 4, "graph": 6, "graph_object": 6, "grate": 0, "green": 8, "ground": 2, "group": 0, "groupbi": 6, "grow": [0, 3, 4, 8, 9], "growth": [3, 4, 8, 9], "gr\u00fcning": 6, "guard": 3, "guarracino": 6, "guid": [0, 2, 4], "guidanc": 4, "guidelin": 0, "guix": 6, "h": 6, "ha": [0, 6], "habitat": 8, "halin": 6, "handbook": 4, "handl": 5, "hard": 9, "harm": 8, "harmon": 3, "hart": 8, "hassan": 6, "have": [0, 4], "haven": 0, "heart": 4, "heat": 3, "height": 6, "help": [0, 2, 3, 4, 8, 9], "hepburn": 3, "herbert": 3, "here": [0, 2, 3, 4], "high": [2, 6, 9], "higher": 3, "highlight": 6, "histogram": 6, "histori": [3, 9], "home": [5, 8], "hook": 0, "hope": 9, "horizont": 6, "hostedtoolcach": 5, "hover_data": 6, "how": [0, 2, 4, 8, 9], "howev": [0, 4, 8], "http": [3, 6, 8, 9], "human": 4, "hyperobject": 9, "h\u00fcgelkultur": 8, "i": [0, 1, 2, 3, 4, 5, 7, 8, 9], "ics": 6, "idea": [0, 4], "ie": 6, "ieee": [3, 6], "ieeexplor": [3, 6], "ignor": 5, "imag": [2, 3, 4, 6, 8, 9], "imagin": 8, "imbal": 3, "impact": 4, "implement": [0, 2], "import": [5, 6], "improv": [0, 4], "includ": [0, 4, 5, 6, 9], "incorpor": 0, "increas": 0, "increment": 5, "index": [0, 5], "indic": 2, "indigen": 3, "indirect": 3, "indirectli": 9, "individu": [0, 3], "infer": 0, "influenc": [3, 4], "inform": [0, 2, 4], "innat": 4, "innov": [4, 8], "insight": [2, 4, 9], "inspir": [2, 3, 6], "instal": 0, "instanc": 9, "instruct": 0, "integr": 4, "intend": 2, "intent": 9, "interconnect": 3, "interdepend": 3, "interest": 0, "intern": [1, 6], "intertwin": [3, 9], "interweav": 3, "intric": 3, "intuit": 0, "invis": 4, "involv": 0, "io": 6, "ipynb": 6, "isakov": 6, "isbn": [3, 8, 9], "isin": 6, "issu": [0, 2, 4], "iter": [5, 8], "its": 4, "itself": 0, "j": [3, 8], "jacquard": 3, "januari": 3, "japan": 8, "java": 6, "javascript": 6, "jiang": 6, "jissen": 8, "job": 0, "joseph": 8, "journei": 3, "jpg": [3, 9], "jump": 4, "junction": 8, "june": 9, "jupyt": 0, "just": [3, 4], "jyoti": 3, "kagawa": 8, "kairo": 9, "kairolog": 9, "kb": 6, "keep": [2, 4], "keyboardinterrupt": 5, "kimmer": 3, "kind": [0, 4, 9], "know": 4, "knowledg": [3, 4], "kri": 8, "kumar": 3, "label": [0, 2], "lal": 3, "lambda": 6, "landscap": 8, "lang": 6, "languag": 8, "language_grouped_data": 6, "laptop": 0, "larg": [0, 5], "last": [0, 5, 6, 9], "later": 3, "latest": 6, "latticework": 3, "layer": [3, 8], "lead": [3, 4], "learn": [2, 8], "least": 0, "leav": 3, "left": 6, "left_on": 6, "len": 5, "lennylv": 6, "let": 4, "level": 2, "leverag": 0, "levi": 6, "li": [6, 9], "lib": 5, "life": 4, "lifecycl": [4, 9], "lifelong": 8, "light": 2, "like": [0, 3, 8, 9], "lim": 6, "limit": 9, "line": [5, 6], "link": [4, 5, 6], "linkinghub": 3, "linsalrob": 6, "list": 0, "live": [3, 8, 9], "livestock": 8, "ll": 4, "llnl": 4, "lloyd": 9, "local": 0, "locat": [0, 5], "lock": 5, "log": [6, 8], "log_i": 6, "log_x": 6, "long": [4, 8], "loom": 3, "loos": [4, 8], "louzoun": 6, "louzounlab": 6, "lovelac": 3, "low": 4, "lyu": 6, "maco": 0, "mahc": 3, "mai": [0, 6, 8, 9], "main": 0, "maintain": [0, 2, 4], "mainten": [1, 4, 8], "major": [0, 2], "make": [0, 4, 8], "make_subplot": 6, "manag": [0, 3, 4, 5, 8], "mani": 3, "manifest": 6, "mank": 6, "manual": 0, "marginal_i": 6, "marginal_x": 6, "mateo": 8, "materi": [4, 9], "matter": 5, "max_work": 5, "maxplanck": 6, "mcdonough": 8, "mcnair": 6, "md": 4, "mean": [4, 8], "measur": 6, "meet": 3, "melst": 6, "menologia": 4, "mention": 0, "merg": [0, 6], "metagen": 6, "method": [0, 4, 5, 6], "mighti": 9, "mileston": 2, "milkwe": 3, "min": 5, "mind": 4, "minim": 8, "minimum": 4, "minn": 3, "minneapoli": [3, 9], "minnesota": 9, "minor": 0, "mirror": 3, "misalign": 8, "mitig": 3, "model": [0, 6], "modif": 0, "modifi": 0, "modular": 4, "moment": 9, "more": [0, 2, 4, 9], "morton": 9, "moss": 9, "most": [0, 4, 5, 6], "most_recent_commit_d": 5, "motion": 4, "move": [0, 6, 9], "much": 0, "mud": 8, "multi": 8, "multidimension": [4, 8], "munro": 4, "museum": 8, "must": [3, 8], "mutual": 3, "mycorrhiz": 8, "mysteri": 8, "name": [5, 6], "nath": 3, "nation": 4, "natur": [3, 8, 9], "necessari": [0, 8], "need": [0, 6], "net": 6, "network": [3, 4, 8], "new": [0, 2, 3, 4, 8, 9], "newcom": 0, "next": 6, "nihonhyoronsya": 8, "nocer": 8, "node": 0, "nogyo": 8, "non": 8, "none": [5, 6], "nor": 4, "normal": [0, 5, 6], "normalized_total_entropi": 5, "note": [0, 3, 5], "notebook": [5, 6], "nourish": [4, 8], "now": 6, "np": 6, "npm": 0, "nsf": 4, "nuclear": 4, "number": [0, 5, 6], "numpi": 6, "nurs": 8, "nurtur": [4, 8], "nvm": 0, "nwn_celegans_": 6, "object": 8, "observ": [6, 9], "octob": 3, "offer": [8, 9], "offic": 4, "onc": 0, "one": [0, 3, 8], "onli": [4, 9], "opac": 6, "open": [0, 4], "oper": [0, 9], "opportun": [8, 9], "opt": 5, "optim": 4, "option": 9, "order": [0, 4], "org": [3, 6, 8, 9], "organ": [2, 3, 8], "orient": [6, 8], "origin": 2, "other": [0, 2, 4, 7, 8, 9], "our": [0, 2, 3, 4, 8, 9], "ourselv": 3, "out": 0, "outlin": 0, "outward": 8, "over": [4, 5, 6], "overheat": 3, "packag": [0, 5], "page": 2, "panda": [5, 6], "pangenom": 6, "paperback": 3, "parallel": 5, "paralysi": 2, "parkour": 6, "parquet": [5, 6], "part": [0, 3], "parti": 6, "particip": [0, 2], "particular": 0, "partit": 6, "pass": 0, "past": 9, "patch": 0, "patienc": 8, "pattern": [3, 4, 6, 8, 9], "paus": 2, "pd": [5, 6], "pdf": 0, "peel": 9, "pend": 5, "penfold": 4, "peopl": [0, 3], "perenni": 9, "perform": [0, 6, 8, 9], "period": [4, 9], "perl": 6, "perpetu": [4, 9], "persist": 3, "person": 3, "perspect": 8, "petal": 2, "philosophi": [4, 9], "phone": 0, "phrase": 0, "pii": 3, "pio": 6, "place": 3, "plan": [1, 4], "planetari": 4, "plant": 3, "pleas": [0, 2, 4], "plot": 2, "plotli": 6, "plotly_whit": 6, "plu": 0, "pmelst": 6, "pmid": 6, "png": 6, "poe": 0, "poet": 0, "poetri": 0, "polici": 0, "politano": 6, "polito": 6, "portabl": 8, "portion": [0, 8], "posit": 4, "possibl": [0, 2], "post": 4, "potenti": 3, "pr": 0, "practic": [0, 2, 4, 8], "practition": 4, "pragmat": 4, "pre": 0, "predict": 6, "prefer": 0, "premium": 3, "prepar": [6, 9], "preparatori": 9, "prerequisit": 4, "present": 9, "press": 9, "pressur": 4, "previou": 2, "primum": 8, "principl": 4, "print": [5, 8], "prior": 9, "procedur": [0, 9], "process": [2, 5], "process_repo_for_analysi": 5, "processpoolexecutor": 5, "program": [4, 8], "progress": 2, "project": [0, 1, 2, 4, 6, 9], "promis": 9, "promot": 9, "properti": 8, "propos": 0, "prosper": 3, "protect": 3, "proverb": 3, "provid": [0, 2, 3, 4, 8], "psevkin": 6, "pub": 8, "public": 2, "pubmed_github_link": 5, "pubmed_github_links_with_github_data": 6, "pudm": 5, "puls": 9, "pursu": 4, "px": 6, "py": 5, "py3": 5, "pyctyomin": 0, "pyenv": 0, "pygit2": 5, "pypi": 0, "pypoetri": 5, "pyproject": 0, "python": [0, 5, 6], "python3": 5, "qualiti": 6, "quan": 6, "queri": [5, 6], "question": 0, "quickli": 4, "rais": 5, "randal": 4, "rang": 5, "rattan": 3, "re": [0, 2], "read": [0, 4, 5, 6], "read_parquet": [5, 6], "reader": 4, "realiti": 9, "realm": 3, "reced": 9, "recent": [5, 6], "recognit": 3, "recommend": 0, "record": 9, "redistribut": 8, "reduc": 0, "refer": [0, 4], "referenc": 0, "region": 8, "relat": 0, "relationship": [0, 3, 4, 8], "remain": 3, "reminisc": 3, "repeat": 0, "replac": 8, "replant": 9, "repo": [5, 6], "repo_count": 5, "repo_url": 5, "repositori": [0, 2], "repository_analysi": 5, "repository_analysis_result": 6, "repository_analysis_results_batch_": 5, "repository_analysis_results_batch_x": 5, "requir": [0, 8, 9], "research": 4, "reset_index": 6, "resili": [3, 4], "resourc": 9, "respons": 3, "restor": 5, "result": 5, "retriev": 3, "return": 5, "review": 0, "rhein": 8, "right": 6, "right_on": 6, "ring": 9, "riron": 8, "rittai": 8, "river": 8, "roadmap": 2, "robert": 8, "robin": 3, "root": 3, "rough": 9, "round": 3, "row": [5, 6], "rug": 6, "run": 0, "rundes_fenster_mit_gitt": 3, "runner": 5, "rustica": 4, "ryan": 6, "s2351989415000281": 3, "sai": 4, "same": [0, 4, 9], "sampl": 6, "save": 5, "sb1": 6, "scape": 8, "scarciti": 9, "scatter": 6, "scdefg": 6, "scenario": [4, 8], "scheme": 6, "scienc": [4, 9], "sciencenew": 9, "scientif": [3, 4], "scientist": 4, "scope": 0, "script": 6, "season": 9, "section": [0, 1, 4, 6, 7], "secur": 4, "see": [0, 2, 4, 8], "seek": [4, 6], "seem": [4, 8], "seemingli": 4, "seen": 3, "self": 5, "semant": 0, "semver": 0, "sens": [4, 9], "sentiment": 3, "separ": 6, "sequenti": 6, "sequest": 3, "seqwish": 6, "seri": 9, "set": 6, "sever": 0, "sf1": 8, "sf2": 8, "sf3": 8, "sf4": 8, "sf5": 8, "sf6": 8, "shadow": 9, "share": [4, 9], "shed": 8, "shi": 4, "short": 0, "should": 0, "show": 6, "signal": 5, "signifi": 3, "similar": [0, 3, 4, 8, 9], "simplifi": 0, "simul": 4, "sinc": 0, "singl": [0, 6], "site": 5, "size": [0, 6], "slow": 8, "small": 0, "smallest": 4, "smooth": 0, "so": [0, 4], "soft": 8, "softwar": [0, 1, 2, 3, 4, 7, 9], "soil": 8, "some": [8, 9], "someon": 0, "sometim": 4, "soon": 0, "sort_valu": 6, "sourc": [0, 3, 4, 8, 9], "space": 4, "specif": 2, "speed": 0, "spokan": 8, "spring": 9, "stabil": 9, "stage": 2, "stappmann": 8, "start": [4, 5, 8], "state": [5, 9], "statu": [0, 2], "step": [0, 8], "sternberg": 6, "stiftung": 8, "store": 5, "stori": [4, 9], "strateg": 2, "strength": 3, "stress": 9, "string": 0, "strive": 0, "structur": [3, 4, 8], "student": 8, "studi": 9, "style": 0, "submit": [0, 3, 5], "subplot": 6, "subset": 6, "suggest": 4, "suit": 8, "sundial_2916_hdr": 9, "supplier": 8, "support": [3, 4], "sure": 0, "surpris": [4, 8], "surround": [4, 8], "sustain": [0, 3, 4], "sweetgrass": 3, "sync": 0, "sysbio": 6, "system": [0, 3, 4, 8, 9], "systemat": 3, "t": [0, 8], "tabl": [0, 6], "tag": 0, "take": 8, "task": 5, "task_nam": 0, "teach": 3, "teacher": 8, "technic": [2, 3], "technologi": [0, 7], "tell": 9, "templat": [0, 6], "tempor": 9, "tend": 3, "tens": 9, "term": [4, 8], "test": [0, 5], "text": 6, "than": 0, "thank": [0, 2], "thei": [2, 3, 4, 5, 8], "them": [2, 8], "theme": 6, "theori": 8, "therefor": 8, "thermal": 6, "thi": [0, 2, 3, 5, 6, 8, 9], "thing": [0, 4, 8], "those": 9, "thread": 5, "three": 8, "through": [0, 2, 3, 4, 5, 8, 9], "time": [0, 4, 5, 8, 9], "time_of_exist": 5, "timelin": 2, "timeout": 5, "timeouterror": 5, "timothi": 9, "titl": 6, "to_parquet": 5, "todo": 2, "togeth": 3, "tokyo": 8, "tolist": 5, "toml": 0, "tomorrow": [3, 9], "tool": [0, 2, 4, 6], "top": 6, "torr": 6, "total": [5, 6], "total_futur": 5, "total_repo": 5, "toward": [3, 4, 8], "toyohiko": 8, "traceback": 5, "track": 2, "tracker": 0, "trade": 3, "tradit": 4, "transfer": 8, "tree": [8, 9], "tripl": 0, "true": [5, 6], "truli": 8, "try": 5, "tug": 8, "type": 0, "u": [2, 3, 4, 8, 9], "unaccept": 0, "unbias": 6, "uncanni": 9, "undeni": 3, "under": [0, 4, 6], "undergo": 9, "undermin": 8, "understand": [3, 4, 6, 9], "understood": 4, "understori": 8, "uneven": 4, "unfamiliar": 8, "unfinish": 5, "uniqu": 9, "uniti": 3, "univers": 9, "unlik": 4, "unpredict": 4, "until": 3, "up": 0, "updat": [0, 2], "update_layout": 6, "uphold": 0, "upon": 3, "upsid": 8, "url": [3, 5, 6, 8, 9], "us": [0, 2, 4, 5], "user": 0, "usernam": 0, "util": 0, "vale": 0, "valu": 5, "vancouv": 6, "vari": 9, "variou": 8, "ve": 0, "veget": 8, "veiga": 6, "vessel": 9, "via": [0, 4], "viabil": 8, "vibranc": [3, 9], "view": [2, 3], "virtualenv": 5, "visibl": [0, 2, 9], "vision": 4, "visit": [3, 6, 8, 9], "vitra": 8, "vivian": 8, "volunt": 8, "vs1": 9, "vs2": 9, "vs3": 9, "vt": 8, "wa": 4, "wai": [4, 8], "wait": 5, "wait_timeout": 5, "waiter": 5, "wall": 3, "want": 0, "wardian": 8, "wast": [0, 8], "we": [0, 3, 4, 6, 8, 9], "weav": 3, "websit": 0, "weil": 8, "welcom": [0, 2], "well": [3, 4, 8], "were": 8, "what": [0, 2, 4, 5, 8, 9], "when": [0, 2, 4], "where": [0, 2, 3, 4, 5, 9], "which": [0, 2, 4, 5, 6, 8, 9], "while": 0, "white": 8, "who": 3, "why": [0, 4], "wide": 2, "width": 6, "wiki": [3, 8, 9], "wikimedia": [3, 8, 9], "william": 8, "willow": 3, "wind": 3, "window": [0, 3], "winter": 9, "wisdom": [3, 9], "within": [0, 2, 4, 5, 8, 9], "without": 4, "wood": 9, "woodi": 3, "word": 8, "work": [0, 2, 3, 4, 8], "workflow": 0, "world": [3, 4, 9], "wormbas": 6, "would": 0, "wrap": 5, "wrapper": 5, "wright": 9, "write": 0, "write_imag": 6, "written": [0, 5], "wu": 6, "www": 9, "w\u00fcstenrot": 8, "x": [5, 6], "x64": 5, "xaxis_titl": 6, "xkcd": 4, "y": 6, "y2k": 8, "yaml": 0, "yanchor": 6, "yaxis_titl": 6, "year": [3, 9], "yesterdai": 9, "yet": 4, "yml": 0, "yoder": 8, "york": 3, "you": [0, 2, 3, 4, 6], "your": 3, "yref": 6, "zhou": 6}, "titles": ["Contributing", "Garden Circle", "Garden Map", "Garden Lattice", "Welcome", "PubMed article GitHub repository software information entropy", "Visualizing PubMed article GitHub repository software information entropy", "Seed Bank", "Software Forest", "Verdant Sundial"], "titleterms": {"": [2, 4], "acknowledg": [2, 4], "across": 6, "action": 0, "activ": 2, "analysi": 5, "anoth": 6, "ar": 6, "articl": [5, 6], "attribut": 0, "autom": 0, "bank": 7, "between": 6, "bug": 0, "cd": 0, "ci": 0, "circl": 1, "code": 0, "commit": 0, "conduct": 0, "contribut": 0, "d": 2, "data": 6, "develop": 0, "differ": 6, "do": 6, "enhanc": 0, "entropi": [5, 6], "etho": 2, "extract": 6, "first": 0, "forest": 8, "fork": 6, "garden": [1, 2, 3], "get": 0, "git": 0, "github": [0, 5, 6], "how": 6, "i": 6, "inform": [5, 6], "input": 2, "inspir": 4, "issu": 6, "languag": 6, "lattic": 3, "link": 0, "lint": 0, "love": 2, "map": 2, "messag": 0, "motiv": 4, "one": 6, "open": 6, "overview": 0, "primari": 6, "process": 0, "publish": 0, "pubm": [5, 6], "pull": 0, "quick": 0, "relat": 6, "relationship": 6, "releas": 0, "report": 0, "repositori": [5, 6], "request": 0, "section": 2, "secur": 0, "seed": 7, "softwar": [5, 6, 8], "specif": 0, "star": 6, "start": 0, "suggest": 0, "sundial": 9, "task": 0, "thi": 4, "time": 6, "us": 6, "verdant": 9, "version": 0, "visual": [2, 6], "we": 2, "welcom": 4, "what": 6, "who": 4, "within": 6, "your": [0, 2]}}) \ No newline at end of file diff --git a/seed-bank/pubmed-github-repositories/gather-software-information-entropy.html b/seed-bank/pubmed-github-repositories/gather-software-information-entropy.html index 8992e26e..33979845 100644 --- a/seed-bank/pubmed-github-repositories/gather-software-information-entropy.html +++ b/seed-bank/pubmed-github-repositories/gather-software-information-entropy.html @@ -514,25 +514,28 @@

PubMed GitHub Repositories Analysis -
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
:
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
+
+
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
:
@@ -541,157 +544,160 @@ 

PubMed GitHub Repositories Analysis
:
 

-
Traceback (most recent call last):
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
-
Traceback (most recent call last):
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
:
 
-
Traceback (most recent call last):
+
:
 
-
Traceback (most recent call last):
+
:
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
:
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
Traceback (most recent call last):
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+
Traceback (most recent call last):
 
-
:
+
Traceback (most recent call last):
 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+
Traceback (most recent call last):
 
-
    
+
Traceback (most recent call last):
 
Traceback (most recent call last):
 
-
    
+
:
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
Traceback (most recent call last):
 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+
:
 
-
@wraps(f)
+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
:
 
-
    
-
-
-
:
+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
    
 
-
Traceback (most recent call last):
+
:
 
Traceback (most recent call last):
 
-
@wraps(f)
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
-
:
+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
-
:
+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
-

+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
-
:
+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
-

+
    
 
    
 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+
Traceback (most recent call last):
 
-

+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
-
@wraps(f)
+
    
 
-
:
+
    
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
    
 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+
Traceback (most recent call last):
 
-

+
    
 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+
:
 
Traceback (most recent call last):
 
-
Traceback (most recent call last):
+
@wraps(f)
 
-
KeyboardInterrupt
+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
-
: 
+
@wraps(f)
 
-
    
+
@wraps(f)
 
@wraps(f)
 
-
    
+
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f600bf11760>
 
-
Exception ignored from cffi callback <function _transfer_progress_cb at 0x7f38cad39760>
+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
-

+
Traceback (most recent call last):
 
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
+
@wraps(f)
+
+
+
@wraps(f)
+
+
    
 
-
KeyboardInterrupt
+
:
 

@@ -700,31 +706,31 @@ 

PubMed GitHub Repositories Analysis

 

-
Traceback (most recent call last):
+

 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+

 
-
:
+

 
@wraps(f)
 
-
Traceback (most recent call last):
+
    
 
-
:
+
    
 
@wraps(f)
 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+

 
-
    
+
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
 
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
@@ -733,10 +739,13 @@ 

PubMed GitHub Repositories Analysis
Traceback (most recent call last):
 

-
    
+

 
-
@wraps(f)
+

+
+
+

 
-
    
+
@wraps(f)
 
-
  File "/home/runner/.cache/pypoetry/virtualenvs/almanack-1GdAbBV3-py3.11/lib/python3.11/site-packages/pygit2/callbacks.py", line 419, in wrapper
+

 
-
Traceback (most recent call last):
+
KeyboardInterrupt
 

 
-

+
KeyboardInterrupt
 
-

+
KeyboardInterrupt
 
-
@wraps(f)
+
    
 
    
 
+

+
+
---------------------------------------------------------------------------
 KeyboardInterrupt                         Traceback (most recent call last)
 Cell In[1], line 101
diff --git a/seed-bank/pubmed-github-repositories/visualize-pubmed-repo-sofware-entropy.html b/seed-bank/pubmed-github-repositories/visualize-pubmed-repo-sofware-entropy.html
index ac4e9cca..8273166b 100644
--- a/seed-bank/pubmed-github-repositories/visualize-pubmed-repo-sofware-entropy.html
+++ b/seed-bank/pubmed-github-repositories/visualize-pubmed-repo-sofware-entropy.html
@@ -805,9 +805,9 @@ 

What languages are used within PubMed article repositories?