From 6c07529bf9a8a2e122911f1d8665f32364dd6280 Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 12:01:34 -0600 Subject: [PATCH 01/25] environment and lint config --- .alexignore | 2 + .gitignore | 139 ++ .pre-commit-config.yaml | 65 + package-lock.json | 4954 +++++++++++++++++++++++++++++++++++++++ package.json | 5 + poetry.lock | 2250 ++++++++++++++++++ pyproject.toml | 33 + 7 files changed, 7448 insertions(+) create mode 100644 .alexignore create mode 100644 .pre-commit-config.yaml create mode 100644 package-lock.json create mode 100644 package.json create mode 100644 poetry.lock create mode 100644 pyproject.toml diff --git a/.alexignore b/.alexignore new file mode 100644 index 00000000..587e5231 --- /dev/null +++ b/.alexignore @@ -0,0 +1,2 @@ +/src/almanac/_build +poetry.lock diff --git a/.gitignore b/.gitignore index 68bc17f9..72e0eded 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,5 @@ +# referenced from: https://raw.githubusercontent.com/github/gitignore/main/Python.gitignore + # Byte-compiled / optimized / DLL files __pycache__/ *.py[cod] @@ -158,3 +160,140 @@ cython_debug/ # and can be added to the global gitignore or merged into this file. For a more nuclear # option (not recommended) you can uncomment the following to ignore the entire idea folder. #.idea/ + +# referenced from: https://raw.githubusercontent.com/github/gitignore/main/Node.gitignore + +# Logs +logs +*.log +npm-debug.log* +yarn-debug.log* +yarn-error.log* +lerna-debug.log* +.pnpm-debug.log* + +# Diagnostic reports (https://nodejs.org/api/report.html) +report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json + +# Runtime data +pids +*.pid +*.seed +*.pid.lock + +# Directory for instrumented libs generated by jscoverage/JSCover +lib-cov + +# Coverage directory used by tools like istanbul +coverage +*.lcov + +# nyc test coverage +.nyc_output + +# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files) +.grunt + +# Bower dependency directory (https://bower.io/) +bower_components + +# node-waf configuration +.lock-wscript + +# Compiled binary addons (https://nodejs.org/api/addons.html) +build/Release + +# Dependency directories +node_modules/ +jspm_packages/ + +# Snowpack dependency directory (https://snowpack.dev/) +web_modules/ + +# TypeScript cache +*.tsbuildinfo + +# Optional npm cache directory +.npm + +# Optional eslint cache +.eslintcache + +# Optional stylelint cache +.stylelintcache + +# Microbundle cache +.rpt2_cache/ +.rts2_cache_cjs/ +.rts2_cache_es/ +.rts2_cache_umd/ + +# Optional REPL history +.node_repl_history + +# Output of 'npm pack' +*.tgz + +# Yarn Integrity file +.yarn-integrity + +# dotenv environment variable files +.env +.env.development.local +.env.test.local +.env.production.local +.env.local + +# parcel-bundler cache (https://parceljs.org/) +.cache +.parcel-cache + +# Next.js build output +.next +out + +# Nuxt.js build / generate output +.nuxt +dist + +# Gatsby files +.cache/ +# Comment in the public line in if your project uses Gatsby and not Next.js +# https://nextjs.org/blog/next-9-1#public-directory-support +# public + +# vuepress build output +.vuepress/dist + +# vuepress v2.x temp and cache directory +.temp +.cache + +# Docusaurus cache and generated files +.docusaurus + +# Serverless directories +.serverless/ + +# FuseBox cache +.fusebox/ + +# DynamoDB Local files +.dynamodb/ + +# TernJS port file +.tern-port + +# Stores VSCode versions used for testing VSCode extensions +.vscode-test + +# yarn v2 +.yarn/cache +.yarn/unplugged +.yarn/build-state.yml +.yarn/install-state.gz +.pnp.* + +# almanac-specific ignores + +/src/almanac/_build diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 00000000..8b4d5915 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,65 @@ +# See https://pre-commit.com for more information +# See https://pre-commit.com/hooks.html for more hooks +default_language_version: + python: python3.11 +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.5.0 + hooks: + - id: trailing-whitespace + - id: end-of-file-fixer + - id: check-yaml + - id: check-added-large-files + - id: check-toml + - repo: https://github.com/codespell-project/codespell + rev: v2.2.6 + hooks: + - id: codespell + exclude: | + (?x)^( + .*\.lock | + .*\.json + )$ + additional_dependencies: + - tomli + - repo: https://github.com/executablebooks/mdformat + rev: 0.7.17 + hooks: + - id: mdformat + additional_dependencies: + - mdformat-myst + - mdformat-gfm + - repo: https://github.com/adrienverge/yamllint + rev: v1.35.1 + hooks: + - id: yamllint + - repo: https://github.com/psf/black + rev: 24.2.0 + hooks: + - id: black + - repo: https://github.com/asottile/blacken-docs + rev: 1.16.0 + hooks: + - id: blacken-docs + - repo: https://github.com/PyCQA/isort + rev: 5.13.2 + hooks: + - id: isort + - repo: https://github.com/PyCQA/bandit + rev: 1.7.8 + hooks: + - id: bandit + args: ["-c", "pyproject.toml"] + additional_dependencies: ["bandit[toml]"] + - repo: local + hooks: + - id: alex.js + name: alex.js language check + entry: npx alex + language: system + pass_filenames: true + exclude: | + (?x)^( + .*\.lock | + 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"sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"}, +] + +[[package]] +name = "wheel" +version = "0.42.0" +description = "A built-package format for Python" +optional = false +python-versions = ">=3.7" +files = [ + {file = "wheel-0.42.0-py3-none-any.whl", hash = "sha256:177f9c9b0d45c47873b619f5b650346d632cdc35fb5e4d25058e09c9e581433d"}, + {file = "wheel-0.42.0.tar.gz", hash = "sha256:c45be39f7882c9d34243236f2d63cbd58039e360f85d0913425fbd7ceea617a8"}, +] + +[package.extras] +test = ["pytest (>=6.0.0)", "setuptools (>=65)"] + +[[package]] +name = "zipp" +version = "3.17.0" +description = "Backport of pathlib-compatible object wrapper for zip files" +optional = false +python-versions = ">=3.8" +files = [ + {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"}, + {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"}, +] + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] + +[metadata] +lock-version = "2.0" +python-versions = "^3.11" +content-hash = "c0d3b2b057ed3d71b5f6ac896104269d9bf3b4dc60b8dbc377fb00ffe0388166" diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 00000000..eed3601a --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,33 @@ +[tool.poetry] +name = "software-gardening-almanac" +version = "0.0.1" +description = "An open-source handbook of applied guidance and tools for sustainable software development and maintenance." +authors = ["Software Gardening Community"] +license = "BSD-3-Clause" +readme = "README.md" + +[tool.poetry.dependencies] +python = "^3.11" +jupyter-book = "^1.0.0" + +[tool.poetry.group.dev.dependencies] +poethepoet = "^0.25.0" + +[tool.isort] +profile = "black" + +# defines a poe the poet task for building jupyter book +[tool.poe.tasks.build-book] +# sets a cwd relative for the shell script below +cwd = "." +# shell command below runs dvc pull to update data and runs python script +shell = """ + jupyter-book build src/almanac +""" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + +[tool.setuptools_scm] +root = "." From 5fce6e4b2ed88aebe00ceebc7a40d60c222ab0f7 Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 12:08:34 -0600 Subject: [PATCH 02/25] update readme and add initial jupyterbook content --- README.md | 3 ++- src/almanac/_config.yml | 24 ++++++++++++++++++++++++ src/almanac/_toc.yml | 5 +++++ src/almanac/introduction.md | 3 +++ src/almanac/sandbox.md | 16 ++++++++++++++++ 5 files changed, 50 insertions(+), 1 deletion(-) create mode 100644 src/almanac/_config.yml create mode 100644 src/almanac/_toc.yml create mode 100644 src/almanac/introduction.md create mode 100644 src/almanac/sandbox.md diff --git a/README.md b/README.md index 86be02b8..1bec5d11 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,3 @@ -# almanac +# The Software Gardening Almanac + An open-source handbook of applied guidance and tools for sustainable software development and maintenance. diff --git a/src/almanac/_config.yml b/src/almanac/_config.yml new file mode 100644 index 00000000..e69f350b --- /dev/null +++ b/src/almanac/_config.yml @@ -0,0 +1,24 @@ +####################################################################################### +# Book settings +title: The Software Gardening Almanac +author: The Software Gardening Community + +####################################################################################### +# Execution settings +execute: + execute_notebooks: force + +####################################################################################### +# HTML-specific settings +html: + use_repository_button: true + use_issues_button: true + use_multitoc_numbering: true + home_page_in_navbar: true + +####################################################################################### +# Repository specification settings +repository: + url: https://github.com/software-gardening/almanac + path_to_book: "src/almanac" + branch: main diff --git a/src/almanac/_toc.yml b/src/almanac/_toc.yml new file mode 100644 index 00000000..2c0c40e7 --- /dev/null +++ b/src/almanac/_toc.yml @@ -0,0 +1,5 @@ +# Software Gardening Almanac TOC +format: jb-book +root: introduction +chapters: + - file: sandbox diff --git a/src/almanac/introduction.md b/src/almanac/introduction.md new file mode 100644 index 00000000..6161b57f --- /dev/null +++ b/src/almanac/introduction.md @@ -0,0 +1,3 @@ +# Welcome + +Welcome to the Software Gardening Almanac, an open-source handbook of applied guidance and tools for sustainable software development and maintenance. diff --git a/src/almanac/sandbox.md b/src/almanac/sandbox.md new file mode 100644 index 00000000..43c2428f --- /dev/null +++ b/src/almanac/sandbox.md @@ -0,0 +1,16 @@ +# Welcome to your Jupyter Book + +This is a small sample book to give you a feel for how book content is +structured. + +:::{note} +Here is a note! +::: + +And here is a code block: + +``` +e = mc^2 +``` + +Check out the content pages bundled with this sample book to see more. From 8cca23cdfc4e2c3bea7d01ac20fc28fcc3726859 Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 12:21:21 -0600 Subject: [PATCH 03/25] add dev build task --- .pre-commit-config.yaml | 3 ++- pyproject.toml | 15 +++++++++------ 2 files changed, 11 insertions(+), 7 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 8b4d5915..4c04129c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -61,5 +61,6 @@ repos: exclude: | (?x)^( .*\.lock | - .pre-commit-config.yaml + .pre-commit-config.yaml | + src/almanac/_config.yml )$ diff --git a/pyproject.toml b/pyproject.toml index eed3601a..51bd1ce4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -16,14 +16,17 @@ poethepoet = "^0.25.0" [tool.isort] profile = "black" -# defines a poe the poet task for building jupyter book -[tool.poe.tasks.build-book] -# sets a cwd relative for the shell script below -cwd = "." -# shell command below runs dvc pull to update data and runs python script -shell = """ +# defines poe the poet tasks +[tool.poe.tasks] +# builds the jupyter book related to this project +build-book.shell = """ jupyter-book build src/almanac """ +# builds the jupyter book related to this project and opens a new browser window +build-book-dev.shell = """ + jupyter-book build src/almanac && \ + python -m webbrowser -t "file://$PWD/src/almanac/_build/html/index.html" +""" [build-system] requires = ["poetry-core"] From 37ea0f0c4e2329156858396be554458c0fdf23d2 Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 15:02:42 -0600 Subject: [PATCH 04/25] add citation file --- .github/workflows/pre-commit-checks.yml | 19 +++++++++++ .pre-commit-config.yaml | 6 ++++ CITATION.cff | 45 +++++++++++++++++++++++++ tests/test_build.py | 0 4 files changed, 70 insertions(+) create mode 100644 .github/workflows/pre-commit-checks.yml create mode 100644 CITATION.cff create mode 100644 tests/test_build.py diff --git a/.github/workflows/pre-commit-checks.yml b/.github/workflows/pre-commit-checks.yml new file mode 100644 index 00000000..79a736a0 --- /dev/null +++ b/.github/workflows/pre-commit-checks.yml @@ -0,0 +1,19 @@ +--- +# used for running pre-commit checks +name: pre-commit checks + +on: + push: + branches: [main] + pull_request: + branches: [main] + +jobs: + run_pre_commit_tests: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 + with: + python-version: "3.11" + - uses: pre-commit/action@v3.0.1 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 4c04129c..3473f07b 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -64,3 +64,9 @@ repos: .pre-commit-config.yaml | src/almanac/_config.yml )$ + - id: cffconvert + name: cffconvert check for citation.cff formatting + entry: cffconvert --validate + language: system + pass_filenames: true + files: CITATION.cff diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 00000000..d58ac386 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,45 @@ +# This CITATION.cff file was generated with cffinit. +# Visit https://bit.ly/cffinit to generate yours today! +--- +cff-version: 1.2.0 +title: The Software Gardening Almanac +message: >- + If you use this work in some way, please consider + citing it using the metadata from this file. +type: software +authors: + - given-names: David + family-names: Bunten + orcid: "https://orcid.org/0000-0001-6041-3665" + - given-names: Faisal + family-names: Alquaddoomi + orcid: "https://orcid.org/0000-0003-4297-8747" + - given-names: Vincent + family-names: Rubinetti + orcid: "https://orcid.org/0000-0002-4655-3773" + - given-names: Gregory + family-names: Way + orcid: "https://orcid.org/0000-0002-0503-9348" +repository-code: "https://github.com/software-gardening/almanac" +abstract: | + An open-source handbook of applied guidance and tools for sustainable software development and maintenance. +keywords: + - software-gardening + - software-sustainability + - open-source + - guidance + - book +license: BSD-3-Clause +references: + - authors: + - given-names: David + family-names: Bunten + - family-names: Way + given-names: Gregory P. + date-published: "2023-08-17" + title: Long-Term Software Gardening Strategies for Cultivating Scientific Development Ecosystems + type: article + url: https://bssw.io/blog_posts/long-term-software-gardening-strategies-for-cultivating-scientific-development-ecosystems + notes: | + This blog article is a related resource published through the Better Scientific Software (BSSw) + organization and serves as inspiration towards related materials. diff --git a/tests/test_build.py b/tests/test_build.py new file mode 100644 index 00000000..e69de29b From 9069015df91e58da956b7f700535c003c839e2ef Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 15:04:14 -0600 Subject: [PATCH 05/25] minor changes --- .pre-commit-config.yaml | 4 ++-- CITATION.cff | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 3473f07b..0c226da9 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -66,7 +66,7 @@ repos: )$ - id: cffconvert name: cffconvert check for citation.cff formatting - entry: cffconvert --validate + entry: poetry run cffconvert --validate language: system - pass_filenames: true + pass_filenames: false files: CITATION.cff diff --git a/CITATION.cff b/CITATION.cff index d58ac386..0a98921f 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -4,7 +4,7 @@ cff-version: 1.2.0 title: The Software Gardening Almanac message: >- - If you use this work in some way, please consider + If you use this work in some way, please consider citing it using the metadata from this file. type: software authors: From 4cf691a8ece42b893c886af7dd0dec7c9f627849 Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 15:04:22 -0600 Subject: [PATCH 06/25] add a pull request template --- .github/PULL_REQUEST_TEMPLATE.md | 36 ++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 .github/PULL_REQUEST_TEMPLATE.md diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md new file mode 100644 index 00000000..4b989601 --- /dev/null +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -0,0 +1,36 @@ + + +# Description + + + +## What is the nature of your change? + +- [ ] Content additions or updates (adds or updates content) +- [ ] Bug fix (fixes an issue). +- [ ] Enhancement (adds functionality). +- [ ] Breaking change (these changes would cause existing functionality to not work as expected). + +# Checklist + +Please ensure that all boxes are checked before indicating that a pull request is ready for review. + +- [ ] I have read the [CONTRIBUTING.md](CONTRIBUTING.md) guidelines. +- [ ] My code follows the style guidelines of this project. +- [ ] I have performed a self-review of my own contributions. +- [ ] I have commented my content, particularly in hard-to-understand areas. +- [ ] I have made corresponding changes to related documentation (outside of book content). +- [ ] My changes generate no new warnings. +- [ ] New and existing tests pass locally with my changes. +- [ ] I have added tests that prove my additions are effective or that my feature works. +- [ ] I have deleted all non-relevant text in this pull request template. From 6bfaae1df439c6964507326f406cdc2dd14ed38b Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 15:05:49 -0600 Subject: [PATCH 07/25] add contributing --- CONTRIBUTING.md | 113 ++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 113 insertions(+) create mode 100644 CONTRIBUTING.md diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 00000000..5f2b966c --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,113 @@ +# Contributing + +First of all, thank you for contributing to the Software Gardening Almanac! 🎉 💯 🪴 +We're absolutely grateful for the kindness of your effort applied to grow this project into the best that it can be. + +This document contains guidelines on how to most effectively contribute to this project. + +If you are stuck or would like clarifications, please feel free to ask any questions or for help. + +## Code of conduct + +This project is governed by our [Code of Conduct (CoC) policy](https://github.com/software-gardening/almanac?tab=coc-ov-file) (located [here](https://github.com/software-gardening/.github/blob/main/CODE_OF_CONDUCT.md)). +By participating, you are expected to uphold this code. +Please report unacceptable behavior by following the procedures listed under the [CoC Enforcement section](https://github.com/software-gardening/almanac?tab=coc-ov-file#enforcement). + +## Security + +Please see our [Security policy](https://github.com/software-gardening/almanac?tab=security-ov-file) (located [here](https://github.com/software-gardening/.github/blob/main/SECURITY.md)) for more information on security practices and recommendations associated with this project. + +## Quick links + +- Documentation: +- Issue tracker: + +## Process + +### Reporting bugs or suggesting enhancements + +We’re deeply committed to a simple, intuitive user experience which helps people benefit from the content found within this project. +This commitment requires a good relationship and open communication with our users. + +We encourage you to report bugs or propose enhancements to improve the Software Gardening Almanac as a [GitHub issue](https://docs.github.com/en/issues/tracking-your-work-with-issues/creating-an-issue) associated with the repository. + +First, figure out if your proposal is already implemented by reading existing isssues or pull requests! +Next, check the issues () to see if someone else has already reported the bug or proposed the enhancement you have in mind. +If you do find the suggestion, please comment on the existing issue noting that you are also interested in the functionality. +If you do not find the suggestion, please open a new issue and clearly document the specific enhancement and why it would be helpful for your particular use case. + +Specifically, the following may help when it comes to addressing the issue: + +- The version of the Software Gardening Almanac you're referencing. +- Specific error messages or how the issue exhibits itself. +- Operating system (e.g. MacOS, Windows, etc.) +- Device type (e.g. laptop, phone, etc.) +- Any examples of similar capabilities + +### Your first code contribution + +Contributing code for the first time can be a daunting task. +However, in our community, we strive to be as welcoming as possible to newcomers, while ensuring sustainable software development practices. + +The first thing to figure out is exactly what you’re going to contribute! +We describe all future work as individual [github issues](https://github.com/software-gardening/almanac/issues). +For first time contributors we have specifically labeled as [good first issue](https://github.com/software-gardening/almanac/issues?q=is%3Aissue+is%3Aopen+label%3A%22good+first+issue%22). + +If you want to contribute code that we haven’t already outlined, please start a discussion in a new issue before writing any code. +A discussion will clarify the new code and reduce merge time. +Plus, it’s possible your contribution belongs in a different code base, and we do not want to waste your time (or ours)! + +### Pull requests + +After you’ve decided to contribute code and have written it up, please file a pull request. +We specifically follow a [forked pull request model](https://docs.github.com/en/github/collaborating-with-issues-and-pull-requests/creating-a-pull-request-from-a-fork). +Please create a fork of Software Gardening Almanac repository, clone the fork, and then create a new, feature-specific branch. +Once you make the necessary changes on this branch, you should file a pull request to incorporate your changes into the main The Software Gardening Almanac repository. + +The content and description of your pull request are directly related to the speed at which we are able to review, approve, and merge your contribution into The Software Gardening Almanac. +To ensure an efficient review process please perform the following steps: + +1. Follow all instructions in the [pull request template](https://github.com/software-gardening/almanac/blob/main/.github/PULL_REQUEST_TEMPLATE.md) +1. Triple check that your pull request is adding _one_ specific feature. Small, bite-sized pull requests move so much faster than large pull requests. +1. After submitting your pull request, ensure that your contribution passes all status checks (e.g. passes all tests) + +Pull request review and approval is required by at least one project maintainer to merge. +We will do our best to review the code additions in a timely fashion. +Ensuring that you follow all steps above will increase our speed and ability to review. +We will check for accuracy, style, code coverage, and scope. + +### Git commit messages + +For all commit messages, please use a short phrase that describes the specific change. +For example, “Add feature to check normalization method string” is much preferred to “change code”. +When appropriate, reference issues (via `#` plus number) . + +## Development + +### Overview + +The Software Gardening Almanac is primarily written in [Python](https://www.python.org/) through [Jupyter Book](https://jupyterbook.org/) with related environments managed by Python [Poetry](https://python-poetry.org/). +We use [GitHub actions](https://docs.github.com/en/actions) for automated tests. + +### Getting started + +To enable local development, perform the following steps. + +1. [Install Python](https://www.python.org/downloads/) +1. [Install Poetry](https://python-poetry.org/docs/#installation) +1. [Install Poetry Environment](https://python-poetry.org/docs/basic-usage/#installing-dependencies): `poetry install` + +### Linting + +Work added to this repo is automatically checked using [pre-commit](https://pre-commit.com/) via [GitHub Actions](https://docs.github.com/en/actions). +Pre-commit can work alongside your local [git with hooks](https://pre-commit.com/index.html#3-install-the-git-hook-scripts) +After [installing pre-commit](https://pre-commit.com/#installation) within your development environment, the following command also can perform the same checks: + +```sh +% pre-commit run --all-files +``` + +## Attribution + +Portions of this contribution guide were sourced from [pyctyominer](https://github.com/cytomining/pycytominer/blob/master/CONTRIBUTING.md). +Many thanks go to the developers and contributors of that repository. From 351ca486d930537ec50f75d62b171739e8557ffa Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 15:06:00 -0600 Subject: [PATCH 08/25] update dev deps --- poetry.lock | 362 ++++++++++++++++++++++++++++++------------------- pyproject.toml | 2 + 2 files changed, 221 insertions(+), 143 deletions(-) diff --git a/poetry.lock b/poetry.lock index f2038858..c2134b10 100644 --- a/poetry.lock +++ b/poetry.lock @@ -119,6 +119,29 @@ files = [ {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"}, ] +[[package]] +name = "cffconvert" +version = "2.0.0" +description = "Command line program to validate and convert CITATION.cff files." +optional = false +python-versions = "*" +files = [ + {file = "cffconvert-2.0.0-py3-none-any.whl", hash = "sha256:573c825e4e16173d99396dc956bd22ff5d4f84215cc16b6ab05299124f5373bb"}, + {file = "cffconvert-2.0.0.tar.gz", hash = "sha256:b4379ee415c6637dc9e3e7ba196605cb3cedcea24613e4ea242c607d9e98eb50"}, +] + +[package.dependencies] +click = ">=7.0,<9" +jsonschema = ">=3.0,<4" +pykwalify = ">=1.6" +requests = ">=2.20,<3" +"ruamel.yaml" = ">=0.16.0" + +[package.extras] +dev = ["isort", "prospector[with-pyroma] (>=1.4)", "pytest (>=6)", "pytest-cov"] +gcloud = ["flask"] +publishing = ["twine", "wheel"] + [[package]] name = "cffi" version = "1.16.0" @@ -366,6 +389,16 @@ files = [ {file = "decorator-5.1.1.tar.gz", hash = "sha256:637996211036b6385ef91435e4fae22989472f9d571faba8927ba8253acbc330"}, ] +[[package]] +name = "docopt" +version = "0.6.2" +description = "Pythonic argument parser, that will make you smile" +optional = false +python-versions = "*" +files = [ + {file = "docopt-0.6.2.tar.gz", hash = "sha256:49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491"}, +] + [[package]] name = "docutils" version = "0.20.1" @@ -517,6 +550,17 @@ docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.link perf = ["ipython"] testing = ["flufl.flake8", 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a/pyproject.toml b/pyproject.toml index 51bd1ce4..bed0b27b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,6 +12,8 @@ jupyter-book = "^1.0.0" [tool.poetry.group.dev.dependencies] poethepoet = "^0.25.0" +pytest = "^8.1.1" +cffconvert = "^2.0.0" [tool.isort] profile = "black" From 2e9a137fe731ccdb2b5c925522fdcd86f47355d3 Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 15:06:29 -0600 Subject: [PATCH 09/25] update scaffold content --- src/almanac/_config.yml | 1 + src/almanac/_toc.yml | 10 ++++++---- src/almanac/preface.md | 3 +++ src/almanac/sandbox.md | 4 ++-- 4 files changed, 12 insertions(+), 6 deletions(-) create mode 100644 src/almanac/preface.md diff --git a/src/almanac/_config.yml b/src/almanac/_config.yml index e69f350b..3e31e02e 100644 --- a/src/almanac/_config.yml +++ b/src/almanac/_config.yml @@ -1,3 +1,4 @@ +# Software Gardening Almanac - Jupyter Book Configuration ####################################################################################### # Book settings title: The Software Gardening Almanac diff --git a/src/almanac/_toc.yml b/src/almanac/_toc.yml index 2c0c40e7..ebabead2 100644 --- a/src/almanac/_toc.yml +++ b/src/almanac/_toc.yml @@ -1,5 +1,7 @@ -# Software Gardening Almanac TOC +# Software Gardening Almanac - Jupyter Book Table of Contents (TOC) format: jb-book -root: introduction -chapters: - - file: sandbox +root: introduction.md +parts: + - chapters: + - file: preface.md + - file: sandbox.md diff --git a/src/almanac/preface.md b/src/almanac/preface.md new file mode 100644 index 00000000..f33ba206 --- /dev/null +++ b/src/almanac/preface.md @@ -0,0 +1,3 @@ +# Preface + +This is a placeholder for preface content. diff --git a/src/almanac/sandbox.md b/src/almanac/sandbox.md index 43c2428f..468bd359 100644 --- a/src/almanac/sandbox.md +++ b/src/almanac/sandbox.md @@ -3,9 +3,9 @@ This is a small sample book to give you a feel for how book content is structured. -:::{note} +```{note} Here is a note! -::: +``` And here is a code block: From f4d15bbd233a31fc24242638d5fd4654a14a19b2 Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 15:08:57 -0600 Subject: [PATCH 10/25] rename license file with extension --- LICENSE => LICENSE.txt | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename LICENSE => LICENSE.txt (100%) diff --git a/LICENSE b/LICENSE.txt similarity index 100% rename from LICENSE rename to LICENSE.txt From a43bb6701a231ea151f9e75d3300c8f5fa5788df Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 15:56:04 -0600 Subject: [PATCH 11/25] update tests --- .github/workflows/pre-commit-checks.yml | 2 +- .github/workflows/pytest-tests.yml | 24 +++++++++++++++ poetry.lock | 38 ++++++++++++++++++++++- pyproject.toml | 1 + src/almanac/_toc.yml | 2 +- tests/conftest.py | 41 +++++++++++++++++++++++++ tests/test_build.py | 37 ++++++++++++++++++++++ 7 files changed, 142 insertions(+), 3 deletions(-) create mode 100644 .github/workflows/pytest-tests.yml create mode 100644 tests/conftest.py diff --git a/.github/workflows/pre-commit-checks.yml b/.github/workflows/pre-commit-checks.yml index 79a736a0..1fe1df3a 100644 --- a/.github/workflows/pre-commit-checks.yml +++ b/.github/workflows/pre-commit-checks.yml @@ -9,7 +9,7 @@ on: branches: [main] jobs: - run_pre_commit_tests: + pre_commit_checks: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 diff --git a/.github/workflows/pytest-tests.yml b/.github/workflows/pytest-tests.yml new file mode 100644 index 00000000..8724cea4 --- /dev/null +++ b/.github/workflows/pytest-tests.yml @@ -0,0 +1,24 @@ +# used for running pytest tests +name: pytest tests + +on: + push: + branches: [main] + pull_request: + branches: [main] + +jobs: + pytest_tests: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 + with: + python-version: "3.11" + - name: Setup poetry + shell: bash + run: | + python -m pip install poetry + - name: Run pytest + run: | + poetry run pytest diff --git a/poetry.lock b/poetry.lock index c2134b10..f5aa228f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -389,6 +389,26 @@ files = [ {file = "decorator-5.1.1.tar.gz", hash = "sha256:637996211036b6385ef91435e4fae22989472f9d571faba8927ba8253acbc330"}, ] +[[package]] +name = "dnspython" +version = "2.6.1" +description = "DNS toolkit" +optional = false +python-versions = ">=3.8" +files = [ + {file = "dnspython-2.6.1-py3-none-any.whl", hash = "sha256:5ef3b9680161f6fa89daf8ad451b5f1a33b18ae8a1c6778cdf4b43f08c0a6e50"}, + {file = "dnspython-2.6.1.tar.gz", hash = "sha256:e8f0f9c23a7b7cb99ded64e6c3a6f3e701d78f50c55e002b839dea7225cff7cc"}, +] + +[package.extras] +dev = ["black (>=23.1.0)", "coverage (>=7.0)", "flake8 (>=7)", "mypy (>=1.8)", "pylint (>=3)", "pytest (>=7.4)", "pytest-cov (>=4.1.0)", "sphinx (>=7.2.0)", "twine (>=4.0.0)", "wheel (>=0.42.0)"] +dnssec = ["cryptography (>=41)"] +doh = ["h2 (>=4.1.0)", "httpcore (>=1.0.0)", "httpx (>=0.26.0)"] +doq = ["aioquic (>=0.9.25)"] +idna = ["idna (>=3.6)"] +trio = ["trio (>=0.23)"] +wmi = ["wmi (>=1.5.1)"] + [[package]] name = "docopt" version = "0.6.2" @@ -803,6 +823,22 @@ files = [ {file = "latexcodec-3.0.0.tar.gz", hash = "sha256:917dc5fe242762cc19d963e6548b42d63a118028cdd3361d62397e3b638b6bc5"}, ] +[[package]] +name = "linkchecker" +version = "10.4.0" +description = "check links in web documents or full websites" +optional = false +python-versions = ">=3.9" +files = [ + {file = "LinkChecker-10.4.0-py3-none-any.whl", hash = "sha256:83931f071916ebc2da1b5ef9b25d65360881b148f27ad9308efe1afe569feb8d"}, + {file = "LinkChecker-10.4.0.tar.gz", hash = "sha256:6250dd29261ddd6df4be9e979bd47a759a6cfafbcaf0f7926afbe2a230aa761a"}, +] + +[package.dependencies] +beautifulsoup4 = ">=4.8.1" +dnspython = ">=2.0" +requests = ">=2.20" + [[package]] name = "linkify-it-py" version = "2.0.3" @@ -2323,4 +2359,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = "^3.11" -content-hash = "ed84ad7efd2e6a0e367abb5620393d76c966fa8a44facd70f68f091666cbcd25" +content-hash = "697ff2883ae38081ec5f8828ec2ead026d0e81dac2d09980f31fc3dfd913900c" diff --git a/pyproject.toml b/pyproject.toml index bed0b27b..47ccab22 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,6 +14,7 @@ jupyter-book = "^1.0.0" poethepoet = "^0.25.0" pytest = "^8.1.1" cffconvert = "^2.0.0" +linkchecker = "^10.4.0" [tool.isort] profile = "black" diff --git a/src/almanac/_toc.yml b/src/almanac/_toc.yml index ebabead2..475cebb1 100644 --- a/src/almanac/_toc.yml +++ b/src/almanac/_toc.yml @@ -4,4 +4,4 @@ root: introduction.md parts: - chapters: - file: preface.md - - file: sandbox.md + - file: sandbox.md diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 00000000..08fa1ff9 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,41 @@ +""" +conftest.py for pytest fixtures and other related aspects. +see: https://docs.pytest.org/en/7.1.x/reference/fixtures.html +""" + +import pytest +import subprocess +import pathlib + + +@pytest.fixture() +def jupyter_book_source(): + """ + Fixture for Jupyter Book content. + """ + + # return the location of the almanac content + return "src/almanac" + + +@pytest.fixture() +def build_jupyter_book(jupyter_book_source: str, tmp_path: pathlib.Path): + """ + Fixture to build Jupyter Book content. + + Note: we use the command line interface for Jupyter Book as this is + well documented and may have alignment with development tasks. + """ + print(type(tmp_path)) + + # build jupyter book content + result = subprocess.run( + ["jupyter-book", "build", jupyter_book_source, "--path-output", tmp_path], + stdout=subprocess.PIPE, + stderr=subprocess.PIPE, + ) + + # check that the build returns 0 (nothing failed) + assert result.returncode == 0 + + return tmp_path diff --git a/tests/test_build.py b/tests/test_build.py index e69de29b..0dc02813 100644 --- a/tests/test_build.py +++ b/tests/test_build.py @@ -0,0 +1,37 @@ +""" +Testing content builds and related aspects. +""" + +import pathlib +import subprocess + + +def test_links(build_jupyter_book: pathlib.Path): + """ + Test links for the Jupyter Book build (html pages) using + linkchecker python package. + + Note: we use the command line interface for linkchecker as this is + well documented and may have alignment with development tasks. + """ + + # build jupyter book content + result = subprocess.run( + [ + "linkchecker", + f"{build_jupyter_book}/", + # we ignore _static files which include special templating features + # which would otherwise cause errors during link checks + "--ignore-url", + f"html/_static", + ], + stdout=subprocess.PIPE, + stderr=subprocess.PIPE, + ) + + try: + # check that the build returns 0 (nothing failed) + assert result.returncode == 0 + except Exception as exc: + # raise the exception with decoded output from linkchecker for readability + raise Exception(result.stdout.decode()) from exc From d34450a2ccc645352ad17352c16cfcc5a82ae137 Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Mar 2024 16:00:47 -0600 Subject: [PATCH 12/25] linting --- CONTRIBUTING.md | 8 ++++---- pyproject.toml | 3 +++ tests/conftest.py | 5 +++-- 3 files changed, 10 insertions(+), 6 deletions(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 5f2b966c..87ecffd0 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -26,15 +26,15 @@ Please see our [Security policy](https://github.com/software-gardening/almanac?t ### Reporting bugs or suggesting enhancements -We’re deeply committed to a simple, intuitive user experience which helps people benefit from the content found within this project. +We’re deeply committed to a smooth and intuitive user experience which helps people benefit from the content found within this project. This commitment requires a good relationship and open communication with our users. We encourage you to report bugs or propose enhancements to improve the Software Gardening Almanac as a [GitHub issue](https://docs.github.com/en/issues/tracking-your-work-with-issues/creating-an-issue) associated with the repository. -First, figure out if your proposal is already implemented by reading existing isssues or pull requests! +First, figure out if your proposal is already implemented by reading existing issues or pull requests! Next, check the issues () to see if someone else has already reported the bug or proposed the enhancement you have in mind. If you do find the suggestion, please comment on the existing issue noting that you are also interested in the functionality. -If you do not find the suggestion, please open a new issue and clearly document the specific enhancement and why it would be helpful for your particular use case. +If you do not find the suggestion, please open a new issue and document the specific enhancement and why it would be helpful for your particular use case. Specifically, the following may help when it comes to addressing the issue: @@ -100,7 +100,7 @@ To enable local development, perform the following steps. ### Linting Work added to this repo is automatically checked using [pre-commit](https://pre-commit.com/) via [GitHub Actions](https://docs.github.com/en/actions). -Pre-commit can work alongside your local [git with hooks](https://pre-commit.com/index.html#3-install-the-git-hook-scripts) +Pre-commit can work alongside your local [git with git-hooks](https://pre-commit.com/index.html#3-install-the-git-hook-scripts) After [installing pre-commit](https://pre-commit.com/#installation) within your development environment, the following command also can perform the same checks: ```sh diff --git a/pyproject.toml b/pyproject.toml index 47ccab22..11bc21ba 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,6 +19,9 @@ linkchecker = "^10.4.0" [tool.isort] profile = "black" +[tool.bandit] +exclude_dirs = ["tests"] + # defines poe the poet tasks [tool.poe.tasks] # builds the jupyter book related to this project diff --git a/tests/conftest.py b/tests/conftest.py index 08fa1ff9..b1e46bda 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -3,9 +3,10 @@ see: https://docs.pytest.org/en/7.1.x/reference/fixtures.html """ -import pytest -import subprocess import pathlib +import subprocess + +import pytest @pytest.fixture() From 7b786c483bbbc71b5dfbc210945dc41ef0a9c9dc Mon Sep 17 00:00:00 2001 From: d33bs Date: Tue, 12 Mar 2024 09:14:48 -0600 Subject: [PATCH 13/25] make the actions reusable --- .../actions/install-node-env/action.yml | 14 ++++++++++++++ .../actions/install-python-env/action.yml | 19 +++++++++++++++++++ .github/workflows/pre-commit-checks.yml | 7 ++++--- .github/workflows/pytest-tests.yml | 9 ++------- 4 files changed, 39 insertions(+), 10 deletions(-) create mode 100644 .github/workflows/actions/install-node-env/action.yml create mode 100644 .github/workflows/actions/install-python-env/action.yml diff --git a/.github/workflows/actions/install-node-env/action.yml b/.github/workflows/actions/install-node-env/action.yml new file mode 100644 index 00000000..b1091953 --- /dev/null +++ b/.github/workflows/actions/install-node-env/action.yml @@ -0,0 +1,14 @@ +# action for installing node and related dependencies +name: Install node env +description: | + Setup node, and npm for use with GitHub Actions workflows. +runs: + using: "composite" + steps: + - uses: actions/setup-node@v4 + with: + node-version: "21.7" + - name: Install npm dependencies + shell: bash + run: | + npm install diff --git a/.github/workflows/actions/install-python-env/action.yml b/.github/workflows/actions/install-python-env/action.yml new file mode 100644 index 00000000..e7818082 --- /dev/null +++ b/.github/workflows/actions/install-python-env/action.yml @@ -0,0 +1,19 @@ +# action for installing python and related dependencies +name: Install python env +description: | + Setup python, and poetry for use with GitHub Actions workflows. +runs: + using: "composite" + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 + with: + python-version: "3.11" + - name: Setup poetry + shell: bash + run: | + python -m pip install poetry + - name: Install poetry dependencies + shell: bash + run: | + poetry install diff --git a/.github/workflows/pre-commit-checks.yml b/.github/workflows/pre-commit-checks.yml index 1fe1df3a..b3f8e26e 100644 --- a/.github/workflows/pre-commit-checks.yml +++ b/.github/workflows/pre-commit-checks.yml @@ -13,7 +13,8 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 - with: - python-version: "3.11" + - name: Install python env + uses: ./.github/actions/install-python-env + - name: Install node env + uses: ./.github/actions/install-node-env - uses: pre-commit/action@v3.0.1 diff --git a/.github/workflows/pytest-tests.yml b/.github/workflows/pytest-tests.yml index 8724cea4..c2776184 100644 --- a/.github/workflows/pytest-tests.yml +++ b/.github/workflows/pytest-tests.yml @@ -12,13 +12,8 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 - with: - python-version: "3.11" - - name: Setup poetry - shell: bash - run: | - python -m pip install poetry + - name: Install python env + uses: ./.github/actions/install-python-env - name: Run pytest run: | poetry run pytest From 1aba13d27a15da66d32322fce4397304fb422ce0 Mon Sep 17 00:00:00 2001 From: d33bs Date: Tue, 12 Mar 2024 09:16:32 -0600 Subject: [PATCH 14/25] move the actions --- .github/{workflows => }/actions/install-node-env/action.yml | 0 .github/{workflows => }/actions/install-python-env/action.yml | 0 2 files changed, 0 insertions(+), 0 deletions(-) rename .github/{workflows => }/actions/install-node-env/action.yml (100%) rename .github/{workflows => }/actions/install-python-env/action.yml (100%) diff --git a/.github/workflows/actions/install-node-env/action.yml b/.github/actions/install-node-env/action.yml similarity index 100% rename from .github/workflows/actions/install-node-env/action.yml rename to .github/actions/install-node-env/action.yml diff --git a/.github/workflows/actions/install-python-env/action.yml b/.github/actions/install-python-env/action.yml similarity index 100% rename from .github/workflows/actions/install-python-env/action.yml rename to .github/actions/install-python-env/action.yml From b86e0db0445841cb0bbaf4b690e99e377bb91323 Mon Sep 17 00:00:00 2001 From: d33bs Date: Tue, 12 Mar 2024 09:19:04 -0600 Subject: [PATCH 15/25] add actionlint to pre-commit --- .pre-commit-config.yaml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 0c226da9..f23a1de2 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -51,6 +51,10 @@ repos: - id: bandit args: ["-c", "pyproject.toml"] additional_dependencies: ["bandit[toml]"] + - repo: https://github.com/rhysd/actionlint + rev: v1.6.27 + hooks: + - id: actionlint-docker - repo: local hooks: - id: alex.js From 72e303b13e3a75fc6dd7350e44be774547d5b781 Mon Sep 17 00:00:00 2001 From: d33bs Date: Tue, 12 Mar 2024 09:47:03 -0600 Subject: [PATCH 16/25] add private key prevention check --- .pre-commit-config.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index f23a1de2..b2042b36 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -11,6 +11,7 @@ repos: - id: check-yaml - id: check-added-large-files - id: check-toml + - id: detect-private-key - repo: https://github.com/codespell-project/codespell rev: v2.2.6 hooks: From 3d74dabbe11e36dbd096748530159744dea6036a Mon Sep 17 00:00:00 2001 From: d33bs Date: Tue, 12 Mar 2024 12:48:18 -0600 Subject: [PATCH 17/25] move sandbox content to tests --- src/almanac/_toc.yml | 1 - tests/conftest.py | 49 ++++++++++++++++--- .../data/jupyter-book}/sandbox.md | 0 tests/test_build.py | 15 +++--- 4 files changed, 49 insertions(+), 16 deletions(-) rename {src/almanac => tests/data/jupyter-book}/sandbox.md (100%) diff --git a/src/almanac/_toc.yml b/src/almanac/_toc.yml index 475cebb1..a8c657c5 100644 --- a/src/almanac/_toc.yml +++ b/src/almanac/_toc.yml @@ -4,4 +4,3 @@ root: introduction.md parts: - chapters: - file: preface.md - - file: sandbox.md diff --git a/tests/conftest.py b/tests/conftest.py index b1e46bda..bb0d3117 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -4,39 +4,72 @@ """ import pathlib +import shutil import subprocess import pytest +def check_subproc_run_for_nonzero(completed_proc: subprocess.CompletedProcess) -> None: + """ + Checks subprocess.CompletedProcess for errors and displays stdout + in a legible way through pytest. + """ + + try: + # check that the build returns 0 (nothing failed) + assert completed_proc.returncode == 0 + except Exception as exc: + # raise the exception with decoded output from linkchecker for readability + raise Exception(completed_proc.stdout.decode()) from exc + + @pytest.fixture() -def jupyter_book_source(): +def jupyter_book_source() -> pathlib.Path: """ Fixture for Jupyter Book content. """ # return the location of the almanac content - return "src/almanac" + return pathlib.Path("src/almanac") @pytest.fixture() -def build_jupyter_book(jupyter_book_source: str, tmp_path: pathlib.Path): +def build_jupyter_book( + jupyter_book_source: str, tmp_path: pathlib.Path +) -> pathlib.Path: """ Fixture to build Jupyter Book content. Note: we use the command line interface for Jupyter Book as this is well documented and may have alignment with development tasks. """ - print(type(tmp_path)) + + # specify a source and target dir for jupyter book content with tests + jupyter_book_test_source = pathlib.Path(tmp_path / "jupyter-book-test-source") + jupyter_book_test_target = pathlib.Path(tmp_path / "jupyter-book-test-target") + + jupyter_book_test_target.mkdir() + + # copy the source and add development-only files for testing + shutil.copytree(jupyter_book_source, jupyter_book_test_source) + shutil.copy("tests/data/jupyter-book/sandbox.md", jupyter_book_test_source) + with open(jupyter_book_test_source / "_toc.yml", "a") as tocfile: + tocfile.write(" - file: sandbox.md") # build jupyter book content result = subprocess.run( - ["jupyter-book", "build", jupyter_book_source, "--path-output", tmp_path], + [ + "jupyter-book", + "build", + jupyter_book_test_source, + "--path-output", + jupyter_book_test_target, + ], stdout=subprocess.PIPE, stderr=subprocess.PIPE, ) - # check that the build returns 0 (nothing failed) - assert result.returncode == 0 + check_subproc_run_for_nonzero(completed_proc=result) - return tmp_path + return jupyter_book_test_target diff --git a/src/almanac/sandbox.md b/tests/data/jupyter-book/sandbox.md similarity index 100% rename from src/almanac/sandbox.md rename to tests/data/jupyter-book/sandbox.md diff --git a/tests/test_build.py b/tests/test_build.py index 0dc02813..5e659c27 100644 --- a/tests/test_build.py +++ b/tests/test_build.py @@ -5,8 +5,10 @@ import pathlib import subprocess +from conftest import check_subproc_run_for_nonzero -def test_links(build_jupyter_book: pathlib.Path): + +def test_links(build_jupyter_book: pathlib.Path) -> None: """ Test links for the Jupyter Book build (html pages) using linkchecker python package. @@ -24,14 +26,13 @@ def test_links(build_jupyter_book: pathlib.Path): # which would otherwise cause errors during link checks "--ignore-url", f"html/_static", + # used to check external-facing links + "--check-extern", + # used to avoid warnings triggering a non-zero return + "--no-warnings", ], stdout=subprocess.PIPE, stderr=subprocess.PIPE, ) - try: - # check that the build returns 0 (nothing failed) - assert result.returncode == 0 - except Exception as exc: - # raise the exception with decoded output from linkchecker for readability - raise Exception(result.stdout.decode()) from exc + check_subproc_run_for_nonzero(completed_proc=result) From 9e171400b174b099093f7246ab77ec7961d4303d Mon Sep 17 00:00:00 2001 From: d33bs Date: Tue, 12 Mar 2024 12:48:56 -0600 Subject: [PATCH 18/25] update contributing --- CONTRIBUTING.md | 33 ++++++++++++++++++++++++++++++--- 1 file changed, 30 insertions(+), 3 deletions(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 87ecffd0..c14db2b9 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -87,15 +87,34 @@ When appropriate, reference issues (via `#` plus number) . ### Overview The Software Gardening Almanac is primarily written in [Python](https://www.python.org/) through [Jupyter Book](https://jupyterbook.org/) with related environments managed by Python [Poetry](https://python-poetry.org/). -We use [GitHub actions](https://docs.github.com/en/actions) for automated tests. +[Node](https://nodejs.org) and [NPM](https://www.npmjs.com/) dependencies are also used to assist development activities. +We use [GitHub actions](https://docs.github.com/en/actions) for [CI/CD](https://en.wikipedia.org/wiki/CI/CD) procedures such as automated tests. ### Getting started To enable local development, perform the following steps. -1. [Install Python](https://www.python.org/downloads/) +1. [Install Python](https://www.python.org/downloads/) (suggested: use [`pyenv`](https://github.com/pyenv/pyenv) for managing Python versions) 1. [Install Poetry](https://python-poetry.org/docs/#installation) -1. [Install Poetry Environment](https://python-poetry.org/docs/basic-usage/#installing-dependencies): `poetry install` +1. [Install Poetry environment](https://python-poetry.org/docs/basic-usage/#installing-dependencies): `poetry install` +1. [Install Node](https://nodejs.org/en/download) (suggested: use [`nvm`](https://github.com/nvm-sh/nvm) for managing Node versions) +1. [Install Node environment](https://docs.npmjs.com/cli/v9/commands/npm-install): `npm install` + +### Development Tasks + +Common development tasks are defined using [Poe the Poet](https://poethepoet.natn.io/), which helps simplify repeated use of commands. +Poe the Poet is included as a Python Poetry dev group dependency and tasks may be used through the Poetry environment. +Please see the [`pyproject.toml`](pyproject.toml) file's `[tool.poe.tasks]` table for a list of available tasks. + +For example: + +```shell +# example of how Poe the Poet commands may be used. +poetry run poe + +# example of a task which runs jupyter-book build for the project +poetry run poe build-book +``` ### Linting @@ -107,6 +126,14 @@ After [installing pre-commit](https://pre-commit.com/#installation) within your % pre-commit run --all-files ``` +### Automated CI/CD with GitHub Actions + +We use [GitHub Actions](https://docs.github.com/en/actions) to help perform automated [CI/CD](https://en.wikipedia.org/wiki/CI/CD) as part of this project. +GitHub Actions involves defining [workflows](https://docs.github.com/en/actions/using-workflows) through [YAML files](https://en.wikipedia.org/wiki/YAML). +These workflows include one or more [jobs](https://docs.github.com/en/actions/using-jobs) which are collections of steps, individual processes which run as part of a job. +GitHub Actions work is defined under the [`.github`](.github) directory. +We suggest the use of [`act`](https://github.com/nektos/act) to help test GitHub Actions work during development. + ## Attribution Portions of this contribution guide were sourced from [pyctyominer](https://github.com/cytomining/pycytominer/blob/master/CONTRIBUTING.md). From 690dcf4a8f941e4341a48a492cd1af5c3b33fbd1 Mon Sep 17 00:00:00 2001 From: Dave Bunten Date: Wed, 13 Mar 2024 11:30:41 -0600 Subject: [PATCH 19/25] Apply suggestions from code review Co-authored-by: Gregory Way --- .github/PULL_REQUEST_TEMPLATE.md | 2 +- CONTRIBUTING.md | 29 +++++++++++++++-------------- 2 files changed, 16 insertions(+), 15 deletions(-) diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index 4b989601..afd1d500 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -23,7 +23,7 @@ Namely, consider addressing the following questions: # Checklist -Please ensure that all boxes are checked before indicating that a pull request is ready for review. +Please ensure that all boxes are checked before indicating that this pull request is ready for review. - [ ] I have read the [CONTRIBUTING.md](CONTRIBUTING.md) guidelines. - [ ] My code follows the style guidelines of this project. diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index c14db2b9..86a675d0 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -29,14 +29,14 @@ Please see our [Security policy](https://github.com/software-gardening/almanac?t We’re deeply committed to a smooth and intuitive user experience which helps people benefit from the content found within this project. This commitment requires a good relationship and open communication with our users. -We encourage you to report bugs or propose enhancements to improve the Software Gardening Almanac as a [GitHub issue](https://docs.github.com/en/issues/tracking-your-work-with-issues/creating-an-issue) associated with the repository. +We encourage you to file a [GitHub issue](https://docs.github.com/en/issues/tracking-your-work-with-issues/creating-an-issue) to report bugs or propose enhancements to improve the Software Gardening Almanac. -First, figure out if your proposal is already implemented by reading existing issues or pull requests! -Next, check the issues () to see if someone else has already reported the bug or proposed the enhancement you have in mind. -If you do find the suggestion, please comment on the existing issue noting that you are also interested in the functionality. -If you do not find the suggestion, please open a new issue and document the specific enhancement and why it would be helpful for your particular use case. +First, figure out if your idea is already implemented by reading existing issues or pull requests! +Check the issues () and pull requests () to see if someone else has already documented or began implementation of your idea. +If you do find your idea in an existing issue, please comment on the existing issue noting that you are also interested in the functionality. +If you do not find your idea, please open a new issue and document why it would be helpful for your particular use case. -Specifically, the following may help when it comes to addressing the issue: +Please also provide the following specifics: - The version of the Software Gardening Almanac you're referencing. - Specific error messages or how the issue exhibits itself. @@ -86,8 +86,8 @@ When appropriate, reference issues (via `#` plus number) . ### Overview -The Software Gardening Almanac is primarily written in [Python](https://www.python.org/) through [Jupyter Book](https://jupyterbook.org/) with related environments managed by Python [Poetry](https://python-poetry.org/). -[Node](https://nodejs.org) and [NPM](https://www.npmjs.com/) dependencies are also used to assist development activities. +We write and develop the Software Gardening Almanac in [Python](https://www.python.org/) through [Jupyter Book](https://jupyterbook.org/) with related environments managed by Python [Poetry](https://python-poetry.org/). +We use [Node](https://nodejs.org) and [NPM](https://www.npmjs.com/) dependencies to assist development activities. We use [GitHub actions](https://docs.github.com/en/actions) for [CI/CD](https://en.wikipedia.org/wiki/CI/CD) procedures such as automated tests. ### Getting started @@ -102,8 +102,8 @@ To enable local development, perform the following steps. ### Development Tasks -Common development tasks are defined using [Poe the Poet](https://poethepoet.natn.io/), which helps simplify repeated use of commands. -Poe the Poet is included as a Python Poetry dev group dependency and tasks may be used through the Poetry environment. +We use [Poe the Poet](https://poethepoet.natn.io/) to define common development tasks, which simplifies repeated commands. +We include Poe the Poet as a Python Poetry dev group dependency, which users access through the Poetry environment. Please see the [`pyproject.toml`](pyproject.toml) file's `[tool.poe.tasks]` table for a list of available tasks. For example: @@ -118,9 +118,10 @@ poetry run poe build-book ### Linting -Work added to this repo is automatically checked using [pre-commit](https://pre-commit.com/) via [GitHub Actions](https://docs.github.com/en/actions). +[pre-commit](https://pre-commit.com/) automatically checks all work added to this repo. +We implement these checks using [GitHub Actions](https://docs.github.com/en/actions). Pre-commit can work alongside your local [git with git-hooks](https://pre-commit.com/index.html#3-install-the-git-hook-scripts) -After [installing pre-commit](https://pre-commit.com/#installation) within your development environment, the following command also can perform the same checks: +After [installing pre-commit](https://pre-commit.com/#installation) within your development environment, the following command performs the same checks: ```sh % pre-commit run --all-files @@ -130,8 +131,8 @@ After [installing pre-commit](https://pre-commit.com/#installation) within your We use [GitHub Actions](https://docs.github.com/en/actions) to help perform automated [CI/CD](https://en.wikipedia.org/wiki/CI/CD) as part of this project. GitHub Actions involves defining [workflows](https://docs.github.com/en/actions/using-workflows) through [YAML files](https://en.wikipedia.org/wiki/YAML). -These workflows include one or more [jobs](https://docs.github.com/en/actions/using-jobs) which are collections of steps, individual processes which run as part of a job. -GitHub Actions work is defined under the [`.github`](.github) directory. +These workflows include one or more [jobs](https://docs.github.com/en/actions/using-jobs) which are collections of individual processes (or steps) which run as part of a job. +We define GitHub Actions work under the [`.github`](.github) directory. We suggest the use of [`act`](https://github.com/nektos/act) to help test GitHub Actions work during development. ## Attribution From ff7e9bd4ed6ec345df4160f9a4d08d22f203ac98 Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 13 Mar 2024 11:50:55 -0600 Subject: [PATCH 20/25] add note about how and where to get help --- CONTRIBUTING.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 86a675d0..82e43ffa 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -6,6 +6,7 @@ We're absolutely grateful for the kindness of your effort applied to grow this p This document contains guidelines on how to most effectively contribute to this project. If you are stuck or would like clarifications, please feel free to ask any questions or for help. +We suggest asking for help in a location which is near where help is needed (for example, in a GitHub issue or a pull request) by ["at (@) mentioning"](https://github.blog/2011-03-23-mention-somebody-they-re-notified/) a Software Gardening Almanac maintainer (for example, `@username`). ## Code of conduct From ce1cbbf82b5411d22ac348ba6cad9c883313ac3a Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 13 Mar 2024 12:58:19 -0600 Subject: [PATCH 21/25] add issue templates for features and bugs --- .github/ISSUE_TEMPLATE/bug.yml | 64 ++++++++++++++++++++++++++++++ .github/ISSUE_TEMPLATE/config.yml | 2 + .github/ISSUE_TEMPLATE/feature.yml | 51 ++++++++++++++++++++++++ 3 files changed, 117 insertions(+) create mode 100644 .github/ISSUE_TEMPLATE/bug.yml create mode 100644 .github/ISSUE_TEMPLATE/config.yml create mode 100644 .github/ISSUE_TEMPLATE/feature.yml diff --git a/.github/ISSUE_TEMPLATE/bug.yml b/.github/ISSUE_TEMPLATE/bug.yml new file mode 100644 index 00000000..933ea252 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/bug.yml @@ -0,0 +1,64 @@ +# GitHub Issue template for bug reports +name: 🐞 Report a bug +description: Help us improve by sharing an error or otherwise broken experience. + +body: + - type: markdown + attributes: + value: | + Thank you for taking time to raise a bug for our awareness! + + If this bug entails a security-focused aspect, please submit a security report instead using GitHub's [report vulnerability form](https://github.com/software-gardening/almanac/security/advisories/new). + + - type: checkboxes + attributes: + label: Existing issue check + description: | + Please make sure to search in the [issues](https://github.com/software-gardening/almanac/issues) first to see whether the same issue was reported already. + If you find an existing issue, please don't hesitate to comment on it or add a reaction to existing content! + options: + - label: | + I found no existing [issues](https://github.com/software-gardening/almanac/issues) covering this topic. + required: true + + - type: textarea + id: description + attributes: + label: Description + description: | + Please provide a specific description of what you experienced including links and other references where possible. + placeholder: | + For example: "I tried `x` and noticed `y` which resulted in `z`." + validations: + required: true + + - type: textarea + attributes: + label: Reproducible example + description: | + How could one reproduce this error or experience? Please provide the steps one must follow to recreate what you observed. + validations: + required: true + + - type: textarea + id: versions + attributes: + label: Versions + description: | + Please provide the version of the Software Gardening Almanac, operating system (OS), etc. + placeholder: | + - The version of the Software Gardening Almanac you're referencing. + - Operating system (e.g. MacOS, Windows, etc.) + - Device type (e.g. laptop, phone, etc.) + validations: + required: true + + - type: checkboxes + attributes: + label: Would you like to work on a solution for this? + description: | + The Software Gardening Almanac is a community-driven project and we love new contributors (including through opening new issues)! + This is an optional check to help us understand your desire to be involved (especially if you already have a good understanding of how to implement it). + We are happy to guide you in the contribution process and please don't hesitate to reach out for help along the way. + options: + - label: Yes I am willing to submit a PR! diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml new file mode 100644 index 00000000..5e51db46 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/config.yml @@ -0,0 +1,2 @@ +# GitHub Issues templates configuration +blank_issues_enabled: true diff --git a/.github/ISSUE_TEMPLATE/feature.yml b/.github/ISSUE_TEMPLATE/feature.yml new file mode 100644 index 00000000..03dc9f21 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/feature.yml @@ -0,0 +1,51 @@ +# GitHub Issue template for bug reports +name: ✨ Propose a feature +description: Collaborate with us to enhance this effort with a new feature that doesn't yet exist. + +body: + - type: markdown + attributes: + value: | + Thank you for taking time to share a new feature or capability which doesn't yet exist! + + If this feature entails a security-focused aspect, please submit a security report instead using GitHub's [report vulnerability form](https://github.com/software-gardening/almanac/security/advisories/new). + + - type: checkboxes + attributes: + label: Existing issue check + description: | + Please make sure to search in the [issues](https://github.com/software-gardening/almanac/issues) first to see whether the same issue was reported already. + If you find an existing issue, please don't hesitate to comment on it or add a reaction to existing content! + options: + - label: | + I found no existing [issues](https://github.com/software-gardening/almanac/issues) covering this topic. + required: true + + - type: textarea + id: description + attributes: + label: Description + description: | + Please provide a specific description of what you'd like to see including the context and what the result might look like. Consider providing this information in the form of a [user story](https://en.wikipedia.org/wiki/User_story) if possible. + placeholder: | + For example: "As a I'd like to see , so that ." + validations: + required: true + + - type: textarea + attributes: + label: Example + description: | + Are there any examples which could help illustrate or implement the feature? + validations: + required: true + + - type: checkboxes + attributes: + label: Would you like to work on a solution for this? + description: | + The Software Gardening Almanac is a community-driven project and we love new contributors (including through opening new issues)! + This is an optional check to help us understand your desire to be involved (especially if you already have a good understanding of how to implement it). + We are happy to guide you in the contribution process and please don't hesitate to reach out for help along the way. + options: + - label: Yes I am willing to submit a PR! From 5b7ded38a27c1d2f99c6f6cdccbd4594425255a3 Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 13 Mar 2024 13:07:44 -0600 Subject: [PATCH 22/25] linting --- .github/ISSUE_TEMPLATE/bug.yml | 57 ++++++++++++++++++---------- .github/ISSUE_TEMPLATE/feature.yml | 61 ++++++++++++++++++++---------- 2 files changed, 78 insertions(+), 40 deletions(-) diff --git a/.github/ISSUE_TEMPLATE/bug.yml b/.github/ISSUE_TEMPLATE/bug.yml index 933ea252..941ed5f5 100644 --- a/.github/ISSUE_TEMPLATE/bug.yml +++ b/.github/ISSUE_TEMPLATE/bug.yml @@ -1,33 +1,44 @@ # GitHub Issue template for bug reports -name: 🐞 Report a bug -description: Help us improve by sharing an error or otherwise broken experience. +name: 🐞 Bug +description: > + Help us improve by sharing an error or otherwise broken experience. body: - type: markdown attributes: - value: | + value: > Thank you for taking time to raise a bug for our awareness! - If this bug entails a security-focused aspect, please submit a security report instead using GitHub's [report vulnerability form](https://github.com/software-gardening/almanac/security/advisories/new). + If this bug entails a security-focused aspect, please submit a + security report instead using GitHub's + [report vulnerability form] + (https://github.com/software-gardening/almanac/security/advisories/new) + . - type: checkboxes attributes: label: Existing issue check - description: | - Please make sure to search in the [issues](https://github.com/software-gardening/almanac/issues) first to see whether the same issue was reported already. - If you find an existing issue, please don't hesitate to comment on it or add a reaction to existing content! + description: > + Please make sure to search in the + [issues](https://github.com/software-gardening/almanac/issues) first + to see whether the same issue was reported already. + If you find an existing issue, please don't hesitate to comment + on it or add a reaction to existing content! options: - - label: | - I found no existing [issues](https://github.com/software-gardening/almanac/issues) covering this topic. + - label: > + I found no existing + [issues](https://github.com/software-gardening/almanac/issues) + covering this topic. required: true - type: textarea id: description attributes: label: Description - description: | - Please provide a specific description of what you experienced including links and other references where possible. - placeholder: | + description: > + Please provide a specific description of what you experienced + including links and other references where possible. + placeholder: > For example: "I tried `x` and noticed `y` which resulted in `z`." validations: required: true @@ -35,8 +46,9 @@ body: - type: textarea attributes: label: Reproducible example - description: | - How could one reproduce this error or experience? Please provide the steps one must follow to recreate what you observed. + description: > + How could one reproduce this error or experience? + Please provide the steps one must follow to recreate what you observed. validations: required: true @@ -44,8 +56,9 @@ body: id: versions attributes: label: Versions - description: | - Please provide the version of the Software Gardening Almanac, operating system (OS), etc. + description: > + Please provide the version of the Software Gardening Almanac, + operating system (OS), etc. placeholder: | - The version of the Software Gardening Almanac you're referencing. - Operating system (e.g. MacOS, Windows, etc.) @@ -56,9 +69,13 @@ body: - type: checkboxes attributes: label: Would you like to work on a solution for this? - description: | - The Software Gardening Almanac is a community-driven project and we love new contributors (including through opening new issues)! - This is an optional check to help us understand your desire to be involved (especially if you already have a good understanding of how to implement it). - We are happy to guide you in the contribution process and please don't hesitate to reach out for help along the way. + description: > + The Software Gardening Almanac is a community-driven project and we + love new contributors (including through opening new issues)! + This is an optional check to help us understand your interest to be + involved (especially if you already have a good understanding + of how to implement it). + We are happy to guide you in the contribution process and please + don't hesitate to reach out for help along the way. options: - label: Yes I am willing to submit a PR! diff --git a/.github/ISSUE_TEMPLATE/feature.yml b/.github/ISSUE_TEMPLATE/feature.yml index 03dc9f21..f8a6a33d 100644 --- a/.github/ISSUE_TEMPLATE/feature.yml +++ b/.github/ISSUE_TEMPLATE/feature.yml @@ -1,51 +1,72 @@ # GitHub Issue template for bug reports -name: ✨ Propose a feature -description: Collaborate with us to enhance this effort with a new feature that doesn't yet exist. +name: ✨ Feature +description: > + Collaborate with us to enhance this effort with a new feature that + doesn't yet exist. body: - type: markdown attributes: - value: | - Thank you for taking time to share a new feature or capability which doesn't yet exist! + value: > + Thank you for taking time to share a new feature or capability + which doesn't yet exist! - If this feature entails a security-focused aspect, please submit a security report instead using GitHub's [report vulnerability form](https://github.com/software-gardening/almanac/security/advisories/new). + If this feature entails a security-focused aspect, please submit + a security report instead using GitHub's + [report vulnerability form] + (https://github.com/software-gardening/almanac/security/advisories/new) + . - type: checkboxes attributes: label: Existing issue check - description: | - Please make sure to search in the [issues](https://github.com/software-gardening/almanac/issues) first to see whether the same issue was reported already. - If you find an existing issue, please don't hesitate to comment on it or add a reaction to existing content! + description: > + Please make sure to search in the + [issues](https://github.com/software-gardening/almanac/issues) first + to see whether the same issue was reported already. + If you find an existing issue, please don't hesitate to comment + on it or add a reaction to existing content! options: - - label: | - I found no existing [issues](https://github.com/software-gardening/almanac/issues) covering this topic. + - label: > + I found no existing + [issues](https://github.com/software-gardening/almanac/issues) + covering this topic. required: true - type: textarea id: description attributes: label: Description - description: | - Please provide a specific description of what you'd like to see including the context and what the result might look like. Consider providing this information in the form of a [user story](https://en.wikipedia.org/wiki/User_story) if possible. - placeholder: | - For example: "As a I'd like to see , so that ." + description: > + Please provide a specific description of what you'd like to see + including the context and what the result might look like. + Consider providing this information in the form of a + [user story](https://en.wikipedia.org/wiki/User_story) if possible. + placeholder: > + For example: "As a I'd like to see , so that + ." validations: required: true - type: textarea attributes: label: Example - description: | - Are there any examples which could help illustrate or implement the feature? + description: > + Are there any examples which could help illustrate or implement + the feature? validations: required: true - type: checkboxes attributes: label: Would you like to work on a solution for this? - description: | - The Software Gardening Almanac is a community-driven project and we love new contributors (including through opening new issues)! - This is an optional check to help us understand your desire to be involved (especially if you already have a good understanding of how to implement it). - We are happy to guide you in the contribution process and please don't hesitate to reach out for help along the way. + description: > + The Software Gardening Almanac is a community-driven project and we + love new contributors (including through opening new issues)! + This is an optional check to help us understand your interest to be + involved (especially if you already have a good understanding + of how to implement it). + We are happy to guide you in the contribution process and please + don't hesitate to reach out for help along the way. options: - label: Yes I am willing to submit a PR! From 390f697944bfff7be41c7293f7e06fe5b6fbf4b8 Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 13 Mar 2024 13:09:29 -0600 Subject: [PATCH 23/25] add pre-commit run step to pull request template --- .github/PULL_REQUEST_TEMPLATE.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index afd1d500..6abed44f 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -12,6 +12,8 @@ Namely, consider addressing the following questions: - What motivated you to open this pull request? - Were there any special adjustments you had to make to complete the work? - Are there any issues which are related to this pull request (you may used a `#` to reference GitHub issues as links within this description)? + +Also, if you haven't already, please use `pre-commit run --all-files` to help check your files using this project's pre-commit configuration. --> ## What is the nature of your change? From 3bbf733b041298c5ea595ad6f011bd8501cc9f10 Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 13 Mar 2024 13:12:22 -0600 Subject: [PATCH 24/25] expand node usage explanation --- CONTRIBUTING.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 82e43ffa..592d0cd5 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -88,7 +88,7 @@ When appropriate, reference issues (via `#` plus number) . ### Overview We write and develop the Software Gardening Almanac in [Python](https://www.python.org/) through [Jupyter Book](https://jupyterbook.org/) with related environments managed by Python [Poetry](https://python-poetry.org/). -We use [Node](https://nodejs.org) and [NPM](https://www.npmjs.com/) dependencies to assist development activities. +We use [Node](https://nodejs.org) and [NPM](https://www.npmjs.com/) dependencies to assist development activities (such as performing linting checks or other capabilities). We use [GitHub actions](https://docs.github.com/en/actions) for [CI/CD](https://en.wikipedia.org/wiki/CI/CD) procedures such as automated tests. ### Getting started From ace50e4a34b61b6868c2c1e24c3e3db7a9b7dc48 Mon Sep 17 00:00:00 2001 From: d33bs Date: Fri, 15 Mar 2024 10:46:22 -0600 Subject: [PATCH 25/25] add contributing link to readme --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index 1bec5d11..cd5f5a2d 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,7 @@ # The Software Gardening Almanac An open-source handbook of applied guidance and tools for sustainable software development and maintenance. + +## CONTRIBUTING + +Please see our [`CONTRIBUTING.md`](CONTRIBUTING.md) document for more information on how to contribute to this project.