diff --git a/.dockerignore b/.dockerignore
new file mode 100644
index 0000000..2311a50
--- /dev/null
+++ b/.dockerignore
@@ -0,0 +1,3 @@
+.git/
+.cache/
+.github/workflows
diff --git a/.editorconfig b/.editorconfig
new file mode 100644
index 0000000..aaa3b26
--- /dev/null
+++ b/.editorconfig
@@ -0,0 +1,15 @@
+# EditorConfig is awesome: https://EditorConfig.org
+
+# top-most EditorConfig file
+root = true
+
+[*]
+indent_style = space
+indent_size = 4
+charset = utf-8
+trim_trailing_whitespace = true
+insert_final_newline = true
+
+[*.{json,yml,md,toml}]
+indent_style = space
+indent_size = 2
diff --git a/.github/.kodiak.toml b/.github/.kodiak.toml
new file mode 100644
index 0000000..1b0ba10
--- /dev/null
+++ b/.github/.kodiak.toml
@@ -0,0 +1,9 @@
+# https://kodiakhq.com/docs/quickstart
+version = 1
+
+[merge]
+method = "squash"
+
+  [merge.message]
+  title = "pull_request_title"
+  body  = "pull_request_body"
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 0000000..0be69bf
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,16 @@
+version: 2
+updates:
+  - package-ecosystem: github-actions
+    directory: "/"
+    open-pull-requests-limit: 1
+    schedule:
+      interval: daily
+    labels:
+      - automerge
+  - package-ecosystem: pip
+    directory: "/"
+    open-pull-requests-limit: 1
+    schedule:
+      interval: daily
+    labels:
+      - automerge
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..64785d2
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,225 @@
+name: CI with dynamic parallel matrix
+
+on:
+  workflow_dispatch:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+env:
+  TIMEOUT: '-1'    # nbconvert timeout
+  EXTRA_ARGS: ''   # Extra arguments for nbconvert
+  CACHE_NUM: '1'
+  JULIA_NUM_THREADS: 'auto'
+  JULIA_CONDAPKG_BACKEND: 'Null'
+  JULIA_CI: 'true'
+  PY_VER: '3.12'
+
+jobs:
+  setup:
+    runs-on: ubuntu-latest
+    outputs:
+      matrix: ${{ steps.set-matrix.outputs.matrix }}
+      hash: ${{ steps.cache-julia.outputs.cache-primary-key }}
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v4
+    - name: Setup Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ env.PY_VER }}
+    - name: Cache pip
+      uses: actions/cache@v3
+      id: cache-pip
+      with:
+        path: ${{ env.pythonLocation }}
+        key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
+    - name: Install python packages
+      if: ${{ steps.cache-pip.outputs.cache-hit != 'true' }}
+      run: pip install -r requirements.txt
+    - name: Read Julia version
+      uses: SebRollen/toml-action@v1.0.2
+      id: read_toml
+      with:
+        file: 'Manifest.toml'
+        field: 'julia_version'
+    - name: Install Julia using jill.sh
+      run: |
+        wget -O /tmp/jill.sh https://raw.githubusercontent.com/abelsiqueira/jill/main/jill.sh
+        bash /tmp/jill.sh --version ${{ steps.read_toml.outputs.value }} -y
+        echo "$HOME/.local/bin" >> $GITHUB_PATH
+    - name: Cache Julia packages
+      uses: actions/cache/restore@v3
+      id: cache-julia
+      with:
+        path: |
+          ~/.julia
+          !~/.julia/registries
+        key: ${{ runner.os }}-julia-${{ env.CACHE_NUM }}-${{ hashFiles('src/**','Project.toml', 'Manifest.toml')}}
+        restore-keys: |
+          ${{ runner.os }}-julia-${{ env.CACHE_NUM }}-
+    - name: Install Julia packages
+      if: ${{ steps.cache-julia.outputs.cache-hit != 'true' }}
+      run: |
+        julia --color=yes -e 'using Pkg; Pkg.add(["IJulia"])'
+        julia --project=@. --color=yes -e 'using Pkg, Dates; Pkg.instantiate(); Pkg.resolve(); Pkg.precompile(); Pkg.gc(collect_delay=Day(0))'
+    - name: Save Julia packages
+      uses: actions/cache/save@v3
+      if: ${{ steps.cache-julia.outputs.cache-hit != 'true' }}
+      with:
+        path: |
+          ~/.julia
+          !~/.julia/registries
+        key: ${{ steps.cache-julia.outputs.cache-primary-key }}
+    - name: List notebooks as a JSON array
+      id: set-matrix
+      working-directory: docs
+      run: echo "matrix=$(python -c 'import glob, json; print(json.dumps(glob.glob("**/*.ipynb", recursive=True)))')" >> "$GITHUB_OUTPUT"
+
+  execute:
+    needs: setup
+    strategy:
+      max-parallel: 20
+      fail-fast: false
+      matrix:
+        # Notebooks need to be executed
+        notebook: ${{ fromJSON(needs.setup.outputs.matrix) }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+      - name: Restore notebook if present
+        uses: actions/cache/restore@v3
+        id: cache
+        with:
+          path: docs/${{ matrix.notebook }}
+          key: ${{ runner.os }}-notebook-${{ hashFiles(format('docs/{0}', matrix.notebook)) }}-${{ needs.setup.outputs.hash }}
+      - name: Setup Python
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.PY_VER }}
+      - name: Cache pip
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        uses: actions/cache@v3
+        id: cache-pip
+        with:
+          path: ${{ env.pythonLocation }}
+          key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
+      - name: Read Julia version
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        uses: SebRollen/toml-action@v1.0.2
+        id: read_toml
+        with:
+          file: 'Manifest.toml'
+          field: 'julia_version'
+      - name: Install Julia using jill.sh
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        run: |
+          wget -O /tmp/jill.sh https://raw.githubusercontent.com/abelsiqueira/jill/main/jill.sh
+          bash /tmp/jill.sh --version ${{ steps.read_toml.outputs.value }} -y
+          echo "$HOME/.local/bin" >> $GITHUB_PATH
+      - name: Restore Julia packages
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        uses: actions/cache/restore@v3
+        with:
+          path: |
+            ~/.julia
+            !~/.julia/registries
+          key: ${{ needs.setup.outputs.hash }}
+      - name: Install Julia kernel
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        run: |
+          julia --color=yes -e 'using IJulia; IJulia.installkernel("Julia", "--project=@.")'
+      - name: Execute Notebook
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        run: >
+          jupyter nbconvert --to notebook --execute --inplace ${{ env.EXTRA_ARGS }}
+          --ExecutePreprocessor.timeout=${{ env.TIMEOUT }}
+          --ExecutePreprocessor.kernel_name=julia-1.$(julia -e 'print(VERSION.minor)')
+          docs/${{ matrix.notebook }}
+      - name: Cache notebook
+        uses: actions/cache/save@v3
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        with:
+          path: docs/${{ matrix.notebook }}
+          key: ${{ steps.cache.outputs.cache-primary-key }}
+      - name: Upload Notebook
+        uses: actions/upload-artifact@v3
+        with:
+          name: notebooks
+          path: docs*/${{ matrix.notebook }}  # keep folder structure
+          retention-days: 1
+
+  render:
+    needs: execute
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Download notebooks
+        uses: actions/download-artifact@v3
+        with:
+          name: notebooks
+          path: out/
+      - name: Display structure of downloaded files
+        run: ls -R
+        working-directory: out
+      - name: Copy back built notebooks
+        run: cp --verbose -rf out/docs/* docs/
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.PY_VER }}
+      - name: Cache pip
+        uses: actions/cache@v3
+        id: cache-pip
+        with:
+          path: ${{ env.pythonLocation }}
+          key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
+      - name: Build website
+        run: jupyter-book build docs/
+      - name: Upload pages artifact
+        if: ${{ github.ref == 'refs/heads/main' }}
+        uses: actions/upload-pages-artifact@v2
+        with:
+          path: docs/_build/html/
+
+  # CI conclusion for GitHub status check
+  # Adaped from https://brunoscheufler.com/blog/2022-04-09-the-required-github-status-check-that-wasnt
+  CI:
+    needs: render
+    if: always()
+    runs-on: ubuntu-latest
+    steps:
+      - run: |
+          if [[ ${{ needs.render.result }} == "success" ]]; then
+            echo "Tests passed"
+            exit 0
+          else
+            echo "Tests failed"
+            exit 1
+          fi
+
+  # Deployment job
+  deploy:
+    name: Deploy to GitHub pages
+    needs: render
+    if: ${{ github.ref == 'refs/heads/main' }}
+    # Grant GITHUB_TOKEN the permissions required to make a Pages deployment
+    permissions:
+      pages: write # to deploy to Pages
+      id-token: write # to verify the deployment originates from an appropriate source
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v3
diff --git a/.github/workflows/linkcheck.yml b/.github/workflows/linkcheck.yml
new file mode 100644
index 0000000..b2e038b
--- /dev/null
+++ b/.github/workflows/linkcheck.yml
@@ -0,0 +1,41 @@
+name: Check markdown links
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: '0 0 1 * *' # Every month
+  push:
+    branches:
+      - main
+    paths:
+      - 'docs/**'
+      - '.github/workflows/linkcheck.yml'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  linkcheck:
+    env:
+      DIR: 'docs'
+      PY_VER: '3.12'
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.PY_VER }}
+      - name: Cache pip
+        uses: actions/cache@v3
+        id: cache-pip
+        with:
+          path: ${{ env.pythonLocation }}
+          key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
+      - name: Install python packages
+        if: ${{ steps.cache-pip.outputs.cache-hit != 'true' }}
+        run: pip install -r requirements.txt
+      - name: Build website
+        run: jupyter-book build ${DIR} --builder linkcheck
diff --git a/.github/workflows/update-manifest.yml b/.github/workflows/update-manifest.yml
new file mode 100644
index 0000000..45e51a6
--- /dev/null
+++ b/.github/workflows/update-manifest.yml
@@ -0,0 +1,50 @@
+name: Auto update Julia dependencies
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: '0 0 * * 1' # Every week
+  push:
+    branches:
+      - main
+    paths:
+      - .github/workflows/update-manifest.yml
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+env:
+  APP_ID: '189113' # https://github.com/apps/wen-wei-s-pr-bot
+
+jobs:
+  update-manifest:
+    permissions:
+      contents: write
+      pull-requests: write
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Setup Julia
+        uses: julia-actions/setup-julia@v1
+      - name: Update Julia dependencies
+        env:
+          JULIA_PKG_PRECOMPILE_AUTO: '0'
+        run: julia --color=yes --project=@. -e 'import Pkg; Pkg.update()'
+      # Authenticate with a custom GitHub APP
+      # https://github.com/peter-evans/create-pull-request/blob/main/docs/concepts-guidelines.md#authenticating-with-github-app-generated-tokens
+      - name: Generate token for PR
+        uses: tibdex/github-app-token@v2
+        id: generate-token
+        with:
+          app_id: ${{ env.APP_ID }}
+          private_key: ${{ secrets.APP_PRIVATE_KEY }}
+      - name: Create Pull Request
+        id: cpr
+        uses: peter-evans/create-pull-request@v5
+        with:
+          title: Julia Dependency Update
+          token: ${{ steps.generate-token.outputs.token }}
+          labels: |
+            automerge
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..3727aba
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,160 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+.pdm.toml
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+/public
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# Julia DEPOT
+.julia/
+
+# Files generated by invoking Julia with --code-coverage
+*.jl.cov
+*.jl.*.cov
+
+# Files generated by invoking Julia with --track-allocation
+*.jl.mem
+
+# System-specific files and directories generated by the BinaryProvider and BinDeps packages
+# They contain absolute paths specific to the host computer, and so should not be committed
+deps/deps.jl
+deps/build.log
+deps/downloads/
+deps/usr/
+deps/src/
+
+# Build artifacts for creating documentation generated by the Documenter package
+docs/build/
+docs/site/
+
+# File generated by Pkg, the package manager, based on a corresponding Project.toml
+# It records a fixed state of all packages used by the project. As such, it should not be
+# committed for packages, but should be committed for applications that require a static
+# environment.
+# Manifest.toml
+LocalPreferences.toml
diff --git a/.vscode/settings.json b/.vscode/settings.json
new file mode 100644
index 0000000..6a6b693
--- /dev/null
+++ b/.vscode/settings.json
@@ -0,0 +1,3 @@
+{
+  "liveServer.settings.root": "/docs/_build/html"
+}
diff --git a/LICENSE.md b/LICENSE.md
new file mode 100644
index 0000000..b856330
--- /dev/null
+++ b/LICENSE.md
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2021 Wen Wei Tseng
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff --git a/Manifest.toml b/Manifest.toml
new file mode 100644
index 0000000..aa4f937
--- /dev/null
+++ b/Manifest.toml
@@ -0,0 +1,1128 @@
+# This file is machine-generated - editing it directly is not advised
+
+julia_version = "1.9.4"
+manifest_format = "2.0"
+project_hash = "6ed3a8c90c7597f40fcfac54d613d9fb8bd1baa0"
+
+[[deps.ArgTools]]
+uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
+version = "1.1.1"
+
+[[deps.Artifacts]]
+uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
+
+[[deps.Base64]]
+uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
+
+[[deps.BitFlags]]
+git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b"
+uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
+version = "0.1.8"
+
+[[deps.Bzip2_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2"
+uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
+version = "1.0.8+0"
+
+[[deps.Cairo_jll]]
+deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
+git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2"
+uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a"
+version = "1.16.1+1"
+
+[[deps.CodecZlib]]
+deps = ["TranscodingStreams", "Zlib_jll"]
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
+uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
+version = "0.7.3"
+
+[[deps.ColorSchemes]]
+deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
+git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129"
+uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
+version = "3.24.0"
+
+[[deps.ColorTypes]]
+deps = ["FixedPointNumbers", "Random"]
+git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4"
+uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
+version = "0.11.4"
+
+[[deps.ColorVectorSpace]]
+deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"]
+git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249"
+uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4"
+version = "0.10.0"
+
+    [deps.ColorVectorSpace.extensions]
+    SpecialFunctionsExt = "SpecialFunctions"
+
+    [deps.ColorVectorSpace.weakdeps]
+    SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
+
+[[deps.Colors]]
+deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
+git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a"
+uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
+version = "0.12.10"
+
+[[deps.Compat]]
+deps = ["UUIDs"]
+git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d"
+uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
+version = "4.10.1"
+weakdeps = ["Dates", "LinearAlgebra"]
+
+    [deps.Compat.extensions]
+    CompatLinearAlgebraExt = "LinearAlgebra"
+
+[[deps.CompilerSupportLibraries_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
+version = "1.0.5+0"
+
+[[deps.ConcurrentUtilities]]
+deps = ["Serialization", "Sockets"]
+git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519"
+uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
+version = "2.3.0"
+
+[[deps.CondaPkg]]
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+[[deps.libinput_jll]]
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+git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37"
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diff --git a/Project.toml b/Project.toml
new file mode 100644
index 0000000..4a20f78
--- /dev/null
+++ b/Project.toml
@@ -0,0 +1,3 @@
+[deps]
+Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
+PythonPlot = "274fc56d-3b97-40fa-a1cd-1b4a50311bf9"
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..bdc91cd
--- /dev/null
+++ b/README.md
@@ -0,0 +1,39 @@
+# Template publishing Julia-kerneled Jupyter notebooks
+
+Click `Use this template` button to copy this repository.
+
+See also:
+
+- [template-quarto-julia](https://github.com/sosiristseng/template-quarto-julia): using GitHub actions and dynamic matrix to execute notebooks in parallel and [quarto][] to rendeer the website.
+
+[quarto]: https://quarto.org/
+[jupyter-book]: https://jupyterbook.org/
+[Cirrus CI]: https://cirrus-ci.org/
+
+## Notebook execution and publish via continuous integration (CI)
+
+- Workflow file: [ci.yml](.github/workflows/ci.yml)
+
+The notebooks (under the `docs` folder) are executed in parallel, and then [Jupyter book][jupyter-book] creates a beautiful website from Markdown and Jupyter notebook files.
+
+## Enable GitHub pages
+
+Open your repository settings => Pages => GitHub Pages => Build and deployment => Source, select `GitHub actions`.
+
+## Automatic dependency updates
+
+### Renovate bot and Kodiak Bot
+
+- See [renovate.json](renovate.json) for Renovate settings.
+
+This repository uses [Renovate Bot](https://github.com/marketplace/renovate) to automatically update Julia packages, Python packages, and GitHub actions.
+
+### Julia dependencies
+
+The Github workflow [update-manifest.yml](.github/workflows/update-manifest.yml) will regularly update Julia dependencies, make a PR with the updated packages, and automatically merge (by [Kodiak bot](https://kodiakhq.com/)) the updates if the notebooks are executed without error.
+
+See [the instructions](https://github.com/peter-evans/create-pull-request/blob/main/docs/concepts-guidelines.md#triggering-further-workflow-runs) for how to trigger CI workflows in a PR. My repo uses a custom [GitHub APP](https://github.com/peter-evans/create-pull-request/blob/main/docs/concepts-guidelines.md#authenticating-with-github-app-generated-tokens) to generate a token on the fly.
+
+## Checking HTTP links
+
+GitHub actions by [linkcheck.yml](.github/workflows/linkcheck.yml) regularly check if the web links in the notebooks are valid.
diff --git a/docs/_config.yml b/docs/_config.yml
new file mode 100644
index 0000000..d67e1c8
--- /dev/null
+++ b/docs/_config.yml
@@ -0,0 +1,100 @@
+# Book settings
+# Learn more at https://jupyterbook.org/customize/config.html
+
+title: My sample book
+author: Wen-Wei Tseng
+copyright: "2023" # Copyright year to be placed in the footer
+logo: ""  # A path to the book logo
+# Patterns to skip when building the book. Can be glob-style (e.g. "*skip.ipynb")
+exclude_patterns            : [_build, Thumbs.db, .DS_Store, "**.ipynb_checkpoints"]
+# Auto-exclude files not in the toc
+only_build_toc_files        : false
+
+# See https://jupyterbook.org/content/execute.html
+execute:
+  execute_notebooks: "off"
+  cache: "" # A path to the jupyter cache that will be used to store execution artifacts. Defaults to `_build/.jupyter_cache/`
+  exclude_patterns: [] # A list of patterns to *skip* in execution (e.g. a notebook that takes a really long time)
+  timeout: 600 # The maximum time (in seconds) each notebook cell is allowed to run.
+  run_in_temp:
+    false # If `True`, then a temporary directory will be created and used as the command working directory (cwd),
+    # otherwise the notebook's parent directory will be the cwd.
+  allow_errors: false # If `False`, when a code cell raises an error the execution is stopped, otherwise all cells are always run.
+  stderr_output: show # One of 'show', 'remove', 'remove-warn', 'warn', 'error', 'severe'
+
+#######################################################################################
+# Parse and render settings
+parse:
+  myst_enable_extensions: # default extensions to enable in the myst parser. See https://myst-parser.readthedocs.io/en/latest/using/syntax-optional.html
+    - amsmath
+    - colon_fence
+    - deflist
+    - dollarmath
+    # - html_admonition
+    # - html_image
+    - linkify
+    # - replacements
+    # - smartquotes
+    - substitution
+    - tasklist
+  myst_url_schemes: [mailto, http, https] # URI schemes that will be recognised as external URLs in Markdown links
+  myst_dmath_double_inline: true  # Allow display math ($$) within an inline context
+
+# Define the name of the latex output file for PDF builds
+latex:
+  latex_documents:
+    targetname: book.tex
+  latex_engine: xelatex # one of 'pdflatex', 'xelatex' (recommended for unicode), 'luatex', 'platex', 'uplatex'
+  use_jupyterbook_latex: true # use sphinx-jupyterbook-latex for pdf builds as default
+
+# Add a bibtex file so that we can create citations
+bibtex_bibfiles:
+  - references.bib
+
+#######################################################################################
+# Launch button settings
+launch_buttons:
+  notebook_interface: jupyterlab # The interface interactive links will activate ["classic", "jupyterlab"]
+  binderhub_url: "https://mybinder.org" # The URL of the BinderHub (e.g., https://mybinder.org)
+  jupyterhub_url: "" # The URL of the JupyterHub (e.g., https://datahub.berkeley.edu)
+  thebe: false # Add a thebe button to pages (requires the repository to run on Binder)
+  colab_url: "" # The URL of Google Colab (https://colab.research.google.com)
+
+# Information about where the book exists on the web
+repository:
+  url: https://github.com/sosiristseng/template-juliabook # Online location of your book (GitHub is recommended)
+  path_to_book: docs # Optional path to your book, relative to the repository root
+  branch: main # Which branch of the repository should be used when creating links (optional)
+
+#######################################################################################
+# HTML-specific settings
+html:
+  favicon: "" # A path to a favicon image
+  use_edit_page_button: false # Whether to add an "edit this page" button to pages. If `true`, repository information in repository: must be filled in
+  use_repository_button: true # Whether to add a link to your repository button
+  use_issues_button: false # Whether to add an "open an issue" button
+  use_multitoc_numbering: true # Continuous numbering across parts/chapters
+  extra_navbar: "" # Will be displayed underneath the left navbar.
+  extra_footer: "" # Will be displayed underneath the footer.
+  google_analytics_id: "" # A GA id that can be used to track book views.
+  home_page_in_navbar: true # Whether to include your home page in the left Navigation Bar
+  baseurl: "" # The base URL where your book will be hosted. Used for creating image previews and social links. e.g.: https://mypage.com/mybook/
+  analytics:
+  comments:
+    hypothesis: false
+    utterances: false
+  announcement              : "" # A banner announcement at the top of the site.
+
+# Advanced and power-user settings
+sphinx:
+  extra_extensions          :   # A list of extra extensions to load by Sphinx (added to those already used by JB).
+  local_extensions          :   # A list of local extensions to load by sphinx specified by "name: path" items
+  recursive_update          : false # A boolean indicating whether to overwrite the Sphinx config (true) or recursively update (false)
+  config:
+    mathjax_path: https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js
+    mathjax3_config:
+      loader:
+        load: ['[tex]/mhchem']
+      tex:
+        packages:
+          '[+]': ['mhchem']
diff --git a/docs/_toc.yml b/docs/_toc.yml
new file mode 100644
index 0000000..ea5d8e0
--- /dev/null
+++ b/docs/_toc.yml
@@ -0,0 +1,8 @@
+# Table of contents
+# Learn more at https://jupyterbook.org/customize/toc.html
+
+format: jb-book
+root: index
+chapters:
+  - file: plots
+  - file: sub/plots
diff --git a/docs/index.md b/docs/index.md
new file mode 100644
index 0000000..476719b
--- /dev/null
+++ b/docs/index.md
@@ -0,0 +1,38 @@
+# Welcome to your Jupyter Book
+
+This is a small sample book to give you a feel for how book content is
+structured.
+
+:::{note}
+Here is a note!
+:::
+
+And here is a code block:
+
+```
+e = mc^2
+```
+
+Check out the content pages bundled with this sample book to see more.
+
+## Adding a citation
+
+You can also cite references that are stored in a `bibtex` file. For example,
+the following syntax: `` {cite}`holdgraf_evidence_2014` `` will render like
+this: {cite}`holdgraf_evidence_2014`.
+
+Moreover, you can insert a bibliography into your page with this syntax:
+The `{bibliography}` directive must be used for all the `{cite}` roles to
+render properly.
+For example, if the references for your book are stored in `references.bib`,
+then the bibliography is inserted with:
+
+````
+```{bibliography}
+```
+````
+
+Resulting in a rendered bibliography that looks like:
+
+```{bibliography}
+```
diff --git a/docs/plots.ipynb b/docs/plots.ipynb
new file mode 100644
index 0000000..eadb81b
--- /dev/null
+++ b/docs/plots.ipynb
@@ -0,0 +1,78 @@
+{
+ "cells": [
+  {
+   "attachments": {},
+   "cell_type": "markdown",
+   "id": "6a2385e8-96d9-4683-ade2-3cf50cb3ac6a",
+   "metadata": {},
+   "source": [
+    "# Plotting with PythonPlot.jl"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "345e0bd6-cfe1-42fc-8361-2fb977d8d0b3",
+   "metadata": {
+    "execution": {
+     "iopub.execute_input": "2022-02-22T13:51:51.177000Z",
+     "iopub.status.busy": "2022-02-22T13:51:50.611000Z",
+     "iopub.status.idle": "2022-02-22T13:52:06.112000Z",
+     "shell.execute_reply": "2022-02-22T13:52:06.078000Z"
+    }
+   },
+   "outputs": [],
+   "source": [
+    "import PythonPlot as plt\n",
+    "using Random\n",
+    "Random.seed!(2022)\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "ffc799f2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "plt.plot(1:5, rand(1:6, 5))\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "e06ab170",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "versioninfo()\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "571c86c5",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import Pkg\n",
+    "Pkg.status()\n"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Julia 1.9.0",
+   "language": "julia",
+   "name": "julia-1.9"
+  },
+  "language_info": {
+   "file_extension": ".jl",
+   "mimetype": "application/julia",
+   "name": "julia",
+   "version": "1.9.0"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/docs/references.bib b/docs/references.bib
new file mode 100644
index 0000000..783ec6a
--- /dev/null
+++ b/docs/references.bib
@@ -0,0 +1,56 @@
+---
+---
+
+@inproceedings{holdgraf_evidence_2014,
+	address = {Brisbane, Australia, Australia},
+	title = {Evidence for {Predictive} {Coding} in {Human} {Auditory} {Cortex}},
+	booktitle = {International {Conference} on {Cognitive} {Neuroscience}},
+	publisher = {Frontiers in Neuroscience},
+	author = {Holdgraf, Christopher Ramsay and de Heer, Wendy and Pasley, Brian N. and Knight, Robert T.},
+	year = {2014}
+}
+
+@article{holdgraf_rapid_2016,
+	title = {Rapid tuning shifts in human auditory cortex enhance speech intelligibility},
+	volume = {7},
+	issn = {2041-1723},
+	url = {http://www.nature.com/doifinder/10.1038/ncomms13654},
+	doi = {10.1038/ncomms13654},
+	number = {May},
+	journal = {Nature Communications},
+	author = {Holdgraf, Christopher Ramsay and de Heer, Wendy and Pasley, Brian N. and Rieger, Jochem W. and Crone, Nathan and Lin, Jack J. and Knight, Robert T. and Theunissen, Frédéric E.},
+	year = {2016},
+	pages = {13654},
+	file = {Holdgraf et al. - 2016 - Rapid tuning shifts in human auditory cortex enhance speech intelligibility.pdf:C\:\\Users\\chold\\Zotero\\storage\\MDQP3JWE\\Holdgraf et al. - 2016 - Rapid tuning shifts in human auditory cortex enhance speech intelligibility.pdf:application/pdf}
+}
+
+@inproceedings{holdgraf_portable_2017,
+	title = {Portable learning environments for hands-on computational instruction using container-and cloud-based technology to teach data science},
+	volume = {Part F1287},
+	isbn = {978-1-4503-5272-7},
+	doi = {10.1145/3093338.3093370},
+	abstract = {© 2017 ACM. There is an increasing interest in learning outside of the traditional classroom setting. This is especially true for topics covering computational tools and data science, as both are challenging to incorporate in the standard curriculum. These atypical learning environments offer new opportunities for teaching, particularly when it comes to combining conceptual knowledge with hands-on experience/expertise with methods and skills. Advances in cloud computing and containerized environments provide an attractive opportunity to improve the effciency and ease with which students can learn. This manuscript details recent advances towards using commonly-Available cloud computing services and advanced cyberinfrastructure support for improving the learning experience in bootcamp-style events. We cover the benets (and challenges) of using a server hosted remotely instead of relying on student laptops, discuss the technology that was used in order to make this possible, and give suggestions for how others could implement and improve upon this model for pedagogy and reproducibility.},
+	booktitle = {{ACM} {International} {Conference} {Proceeding} {Series}},
+	author = {Holdgraf, Christopher Ramsay and Culich, A. and Rokem, A. and Deniz, F. and Alegro, M. and Ushizima, D.},
+	year = {2017},
+	keywords = {Teaching, Bootcamps, Cloud computing, Data science, Docker, Pedagogy}
+}
+
+@article{holdgraf_encoding_2017,
+	title = {Encoding and decoding models in cognitive electrophysiology},
+	volume = {11},
+	issn = {16625137},
+	doi = {10.3389/fnsys.2017.00061},
+	abstract = {© 2017 Holdgraf, Rieger, Micheli, Martin, Knight and Theunissen. Cognitive neuroscience has seen rapid growth in the size and complexity of data recorded from the human brain as well as in the computational tools available to analyze this data. This data explosion has resulted in an increased use of multivariate, model-based methods for asking neuroscience questions, allowing scientists to investigate multiple hypotheses with a single dataset, to use complex, time-varying stimuli, and to study the human brain under more naturalistic conditions. These tools come in the form of “Encoding” models, in which stimulus features are used to model brain activity, and “Decoding” models, in which neural features are used to generated a stimulus output. Here we review the current state of encoding and decoding models in cognitive electrophysiology and provide a practical guide toward conducting experiments and analyses in this emerging field. Our examples focus on using linear models in the study of human language and audition. We show how to calculate auditory receptive fields from natural sounds as well as how to decode neural recordings to predict speech. The paper aims to be a useful tutorial to these approaches, and a practical introduction to using machine learning and applied statistics to build models of neural activity. The data analytic approaches we discuss may also be applied to other sensory modalities, motor systems, and cognitive systems, and we cover some examples in these areas. In addition, a collection of Jupyter notebooks is publicly available as a complement to the material covered in this paper, providing code examples and tutorials for predictive modeling in python. The aimis to provide a practical understanding of predictivemodeling of human brain data and to propose best-practices in conducting these analyses.},
+	journal = {Frontiers in Systems Neuroscience},
+	author = {Holdgraf, Christopher Ramsay and Rieger, J.W. and Micheli, C. and Martin, S. and Knight, R.T. and Theunissen, F.E.},
+	year = {2017},
+	keywords = {Decoding models, Encoding models, Electrocorticography (ECoG), Electrophysiology/evoked potentials, Machine learning applied to neuroscience, Natural stimuli, Predictive modeling, Tutorials}
+}
+
+@book{ruby,
+  title     = {The Ruby Programming Language},
+  author    = {Flanagan, David and Matsumoto, Yukihiro},
+  year      = {2008},
+  publisher = {O'Reilly Media}
+}
diff --git a/docs/sub/plots.ipynb b/docs/sub/plots.ipynb
new file mode 100644
index 0000000..8dca8e1
--- /dev/null
+++ b/docs/sub/plots.ipynb
@@ -0,0 +1,78 @@
+{
+ "cells": [
+  {
+   "attachments": {},
+   "cell_type": "markdown",
+   "id": "6a2385e8-96d9-4683-ade2-3cf50cb3ac6a",
+   "metadata": {},
+   "source": [
+    "# Plotting with Plots.jl"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "345e0bd6-cfe1-42fc-8361-2fb977d8d0b3",
+   "metadata": {
+    "execution": {
+     "iopub.execute_input": "2022-02-22T13:51:51.177000Z",
+     "iopub.status.busy": "2022-02-22T13:51:50.611000Z",
+     "iopub.status.idle": "2022-02-22T13:52:06.112000Z",
+     "shell.execute_reply": "2022-02-22T13:52:06.078000Z"
+    }
+   },
+   "outputs": [],
+   "source": [
+    "using Plots\n",
+    "using Random\n",
+    "Random.seed!(202)\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "ffc799f2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "plot(1:5, rand(1:6, 5))\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "e06ab170",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "versioninfo()\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "571c86c5",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import Pkg\n",
+    "Pkg.status()\n"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Julia 1.9.3",
+   "language": "julia",
+   "name": "julia-1.9"
+  },
+  "language_info": {
+   "file_extension": ".jl",
+   "mimetype": "application/julia",
+   "name": "julia",
+   "version": "1.9.3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..a8b9b7d
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,4 @@
+nbconvert==7.12.0
+matplotlib==3.8.2
+jupyter-book==0.15.1
+docutils!=0.18.*,!=0.19.*
diff --git a/src/.gitkeep b/src/.gitkeep
new file mode 100644
index 0000000..e69de29