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biophys-new.cls
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biophys-new.cls
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\ProvidesClass{biophys-new}
\newif\if@twocol
\newif\if@endfloat
\newif\if@lineno
\newif\if@biblatex
\DeclareOption{twocolumn}{\@twocoltrue}
\DeclareOption{endfloat}{\@endfloattrue}
\DeclareOption{lineno}{\@linenotrue}
\DeclareOption{biblatex}{\@biblatextrue}
\DeclareOption{bibtex}{\@biblatexfalse}
\ProcessOptions\relax
\LoadClass[10pt,twoside]{article}
\RequirePackage{mathtools}
\RequirePackage{sansmath}
\RequirePackage{xpatch}
\RequirePackage[T1]{fontenc}
\RequirePackage{microtype}
\IfFileExists{newtxtext.sty}{%
\RequirePackage{newtxtext}
\RequirePackage{newtxmath}
}{%
\RequirePackage{mathptmx}
\RequirePackage[scaled]{helvet}
}
\RequirePackage{textcase}
\RequirePackage{xcolor}
\frenchspacing
\RequirePackage[bf,sf]{titlesec}
\RequirePackage{fancyhdr}
\RequirePackage{lineno}
\RequirePackage{authblk}
\RequirePackage{environ}
\RequirePackage[runin]{abstract}
\RequirePackage{geometry}
\RequirePackage{threeparttable}
\RequirePackage[tableposition=top,figureposition=bottom]{caption}
\geometry{letterpaper,
inner=48pt,
textwidth=41.6pc,
top=70pt,
textheight=54.85pc,
columnsep=18pt,
headsep=\baselineskip,
footskip=3\baselineskip
}
\def\@papertype{Article}
\def\@titlerunning{}
\def\@authorunning{}
\newcommand{\papertype}[1]{\def\@papertype{#1}}
\newcommand{\runningtitle}[1]{\def\@runningtitle{#1}}
\newcommand{\runningauthor}[1]{\def\@runningauthor{#1}}
\fancyhf{}
\renewcommand{\headrule}{}
\fancyhead[RO]{\sffamily\footnotesize\@runningtitle}
\fancyhead[LE]{\sffamily\footnotesize\@runningauthor}
\fancyfoot[RO]{\sffamily\footnotesize Manuscript submitted to Biophysical Journal\hspace{1em}\textbf{\thepage}}
\fancyfoot[LE]{\sffamily\footnotesize\textbf{\thepage}\hspace{1em}Manuscript submitted to Biophysical Journal}
\pagestyle{fancy}
\fancypagestyle{titlepage}{%
\pagestyle{fancy}
\fancyhead{}
}
\renewcommand{\@maketitle}{%
\thispagestyle{titlepage}
\textsf{Manuscript submitted to \textbf{Biophysical}}\kern1pt\textit{Journal}\\[-0.5em]%
{\LARGE\sffamily\bfseries\color{gray}\@papertype\par}
\bigskip
{\raggedright\bfseries\sffamily\huge\@title\par}
\bigskip
{\raggedright\@author\par}%
}
\renewcommand{\Authfont}{\sffamily\sansmath}
\renewcommand{\Affilfont}{\sffamily\sansmath}
\patchcmd{\AB@authnote}{\normalfont}{}{}{}
\patchcmd{\AB@affilnote}{\normalfont}{}{}{}
\newcommand{\corrauthor}[2][]{\affil[#1]{Correspondence: #2}}
\NewEnviron{frontmatter}{%
\setlength{\parindent}{0pt}
\if@twocol
\twocolumn[%
\if@lineno
\internallinenumbers
\fi
\@maketitle\BODY\bigskip
]%
\else
\@maketitle\BODY\medskip%
\fi
}{}
\renewcommand{\abstracttextfont}{\sffamily\normalsize}
\renewcommand{\abstractnamefont}{\sffamily\normalsize\MakeTextUppercase}
\abslabeldelim{\quad}
\setlength{\absparindent}{0pt}
\setlength{\abstitleskip}{-\parindent}
\setlength{\absleftindent}{0pt}
\setlength{\absrightindent}{0pt}
\if@lineno\linenumbers\fi
\setlength\linenumbersep{4pt}
\setcounter{secnumdepth}{3}
\titleformat{\section}{\sffamily\bfseries\large\raggedright}{\thesection}{1em}{\MakeTextUppercase}
\titleformat*{\subsection}{\sffamily\bfseries\large\raggedright}
\titleformat*{\subsubsection}{\sffamily\bfseries\normalsize\raggedright}
\titlespacing*{\section}{0pt}{1.25\baselineskip}{0.25\baselineskip}
\titlespacing*{\subsection}{0pt}{1.25\baselineskip}{0.25\baselineskip}
\titlespacing*{\subsubsection}{0pt}{1.25\baselineskip}{0.25\baselineskip}
\if@endfloat
\RequirePackage{endfloat}
\renewcommand\floatplace[1]{%
\begin{center}
[\csname #1name\endcsname~\csname thepost#1\endcsname\ about here; moved to end of manuscript by \texttt{endfloat}.]
\end{center}}
\fi
\if@biblatex
\RequirePackage[style=numeric-comp,backend=biber,sorting=none,date=year,natbib]{biblatex}
\DeclareFieldFormat{labelnumberwidth}{#1.}
\DeclareFieldFormat{shorthandwidth}{#1.}
\setlength{\biblabelsep}{0.5em}
% drastic; but fastest way to get parentheses for cites.
\renewrobustcmd{\mkbibbrackets}{\mkbibparens}
\else
\RequirePackage[numbers,sort&compress,round]{natbib}
\bibliographystyle{biophysj}
\renewcommand{\bibnumfmt}[1]{#1.}
\fi
\endinput