From 75fbccf0b53757c53f534f2b29f6123e2a77a326 Mon Sep 17 00:00:00 2001 From: Robyn Marowitz <103532760+rmarow@users.noreply.github.com> Date: Mon, 19 Aug 2024 08:06:21 -0600 Subject: [PATCH] NOAA Sea Ice CDR updates (#56) * Initial changes/updates * Add examples * Updates with aggregates added as items * More examples added * Add instrument and sensor to item * WIP updating collection and items * Add and update examples * Moving things into noaa-cdr-sea-ice-concentration * cont. moving items * Finish aggregate items * Fix missing space * linting * Add last few missing items * Add sea-ice specific instructions to README * Update src/stactools/noaa_cdr/sea_ice_concentration/constants.py Co-authored-by: Pete Gadomski * Update src/stactools/noaa_cdr/sea_ice_concentration/constants.py Co-authored-by: Pete Gadomski * Loosen mypy for unexplained errors * Update mypy.ini * Ruff fixes * Attempt to fix type validation error on instruments --------- Co-authored-by: Pete Gadomski --- CHANGELOG.md | 1 + README.md | 15 + .../collection.json | 493 +++++++++++++++++- .../seaice_conc_daily_nh_1978_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1979_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1980_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1981_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1982_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1983_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1984_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1985_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1986_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1987_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1988_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1989_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1990_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1991_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1992_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1993_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1994_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1995_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1996_v04r00.json | 89 ++++ .../seaice_conc_daily_nh_1997_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1998_v04r00.json | 78 +++ .../seaice_conc_daily_nh_1999_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2000_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2001_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2002_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2003_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2004_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2005_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2006_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2007_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2008_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2009_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2010_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2011_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2012_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2013_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2014_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2015_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2016_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2017_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2018_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2019_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2020_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2021_v04r00.json | 78 +++ .../seaice_conc_daily_nh_2022_v04r00.json | 89 ++++ .../seaice_conc_daily_nh_2023_v04r00.json | 89 ++++ ..._conc_monthly_nh_197811_202312_v04r00.json | 89 ++++ .../seaice_conc_daily_sh_1978_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1979_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1980_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1981_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1982_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1983_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1984_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1985_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1986_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1987_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1988_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1989_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1990_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1991_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1992_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1993_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1994_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1995_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1996_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1997_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1998_v04r00.json | 78 +++ .../seaice_conc_daily_sh_1999_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2000_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2001_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2002_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2003_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2004_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2005_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2006_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2007_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2008_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2009_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2010_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2011_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2012_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2013_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2014_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2015_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2016_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2017_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2018_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2019_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2020_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2021_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2022_v04r00.json | 78 +++ .../seaice_conc_daily_sh_2023_v04r00.json | 78 +++ ..._conc_monthly_sh_197811_202312_v04r00.json | 89 ++++ mypy.ini | 2 +- scripts/create_examples.py | 3 +- scripts/create_item_assets.py | 3 +- scripts/extract_netcdf_asset_metadata.py | 3 +- src/stactools/noaa_cdr/profile.py | 6 +- .../sea_ice_concentration/commands.py | 3 +- .../sea_ice_concentration/constants.py | 24 +- .../noaa_cdr/sea_ice_concentration/stac.py | 5 +- .../commands.py | 3 +- .../sea_surface_temperature_whoi/commands.py | 1 - .../sea_surface_temperature_whoi/stac.py | 1 - src/stactools/noaa_cdr/stac.py | 2 + tests/__init__.py | 3 +- tests/sea_ice_concentration/test_stac.py | 1 - .../test_commands.py | 3 +- tests/test_profile.py | 1 - tests/test_time.py | 1 - 114 files changed, 7907 insertions(+), 54 deletions(-) create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1978_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1979_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1980_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1981_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1982_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1983_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1984_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1985_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1986_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1987_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1988_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1989_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1990_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1991_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1992_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1993_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1994_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1995_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1996_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1997_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1998_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_1999_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2000_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2001_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2002_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2003_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2004_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2005_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2006_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2007_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2008_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2009_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2010_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2011_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2012_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2013_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2014_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2015_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2016_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2017_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2018_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2019_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2020_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2021_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2022_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_2023_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/north/seaice_conc_monthly_nh_197811_202312_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1978_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1979_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1980_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1981_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1982_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1983_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1984_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1985_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1986_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1987_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1988_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1989_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1990_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1991_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1992_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1993_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1994_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1995_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1996_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1997_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1998_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_1999_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2000_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2001_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2002_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2003_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2004_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2005_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2006_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2007_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2008_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2009_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2010_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2011_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2012_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2013_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2014_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2015_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2016_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2017_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2018_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2019_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2020_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2021_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2022_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2023_v04r00.json create mode 100644 examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_monthly_sh_197811_202312_v04r00.json diff --git a/CHANGELOG.md b/CHANGELOG.md index 319a1d4..282253b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,7 @@ number as needed. - Summaries for the ocean heat content collection ([#50](https://github.com/stactools-packages/noaa-cdr/pull/50)) - `max_depth` to ocean heat content netcdf items ([#52](https://github.com/stactools-packages/noaa-cdr/pull/52)) +- Aggregate examples for sea ice concentration, add `common_metadata` to items ### Changed diff --git a/README.md b/README.md index 5c221d7..312cde9 100644 --- a/README.md +++ b/README.md @@ -110,6 +110,21 @@ stac noaa-cdr ocean-heat-content create-collection --create-items --latest-only examples/ocean-heat-content/collection.json ``` +To create an item for sea-ice-concentration (without COGS): + +```sh +stac noaa-cdr sea-ice-concentration create-item + https://noaadata.apps.nsidc.org/NOAA/G02202_V4/north/daily/2023/seaice_conc_daily_nh_20230203_f17_v04r00.nc + noaa-cdr-sea-ice-concentration/north/seaice_conc_daily_nh_20230203_f17_v04r00.json +``` + +To add an item to a catalog: + +```sh +stac add examples/sea-ice-concentration/north/seaice_conc_daily_20230203_f17_v0400.json + examples/noaa-cdr-sea-ice-concentration/collection.json +``` + Each CDR has its own flavor of command line interface; use `stac noaa-cdr --help` to see a list of supported CDRs. diff --git a/examples/noaa-cdr-sea-ice-concentration/collection.json b/examples/noaa-cdr-sea-ice-concentration/collection.json index 01b4411..397d744 100644 --- a/examples/noaa-cdr-sea-ice-concentration/collection.json +++ b/examples/noaa-cdr-sea-ice-concentration/collection.json @@ -11,10 +11,10 @@ "title": "Climate Data Records" }, { - "rel": "license", - "href": "https://www.ncei.noaa.gov/pub/data/sds/cdr/CDRs/Sea_Ice_Concentration/UseAgreement_01B-11.pdf", - "type": "application/pdf", - "title": "NOAA CDR Sea Ice Concentration Use Agreement" + "rel": "about", + "href": "https://nsidc.org/data/g02202/versions/4", + "type": "MediaType.HTML", + "title": "CDR Homepage" }, { "rel": "about", @@ -26,6 +26,466 @@ "rel": "cite-as", "href": "https://doi.org/10.7265/efmz-2t65" }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2023_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2022_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2021_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2020_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2019_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2018_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2017_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2016_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2015_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2014_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2013_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2012_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2011_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2010_v04r00.json", + "type": "application/json" + }, + { + "rel": "item", + "href": "./south/seaice_conc_daily_sh_2009_v04r00.json", + "type": 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Data are available via FTP.", + "created": "2022-10-14T15:26:25Z", + "platform": "DMSP 5D-3/F17 > Defense Meteorological Satellite Program-F17", + "instruments": "SSMI/S > Special Sensor Microwave Imager/Sounder", + "roles": [ + "data" + ] + } + }, + "bbox": [ + -180.0, + -90.0, + 180.0, + -41.45 + ], + "stac_extensions": [ + "https://stac-extensions.github.io/processing/v1.1.0/schema.json", + "https://stac-extensions.github.io/projection/v1.1.0/schema.json" + ] +} \ No newline at end of file diff --git a/examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2023_v04r00.json b/examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2023_v04r00.json new file mode 100644 index 0000000..6eaa43b --- /dev/null +++ b/examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_daily_sh_2023_v04r00.json @@ -0,0 +1,78 @@ +{ + "type": "Feature", + "stac_version": "1.0.0", + "id": "seaice_conc_daily_sh_2023_v04r00", + "properties": { + "start_datetime": "2023-01-01T00:00:00Z", + "end_datetime": "2023-12-31T23:59:59Z", + "noaa_cdr:interval": "daily", + "processing:level": "L3", + "proj:epsg": null, + "proj:wkt2": "PROJCRS[\"unknown\",BASEGEOGCRS[\"unknown\",DATUM[\"unknown\",ELLIPSOID[\"unknown\",6378273,298.279411123064,LENGTHUNIT[\"metre\",1,ID[\"EPSG\",9001]]]],PRIMEM[\"Greenwich\",0,ANGLEUNIT[\"degree\",0.0174532925199433],ID[\"EPSG\",8901]]],CONVERSION[\"unknown\",METHOD[\"Polar Stereographic (variant B)\",ID[\"EPSG\",9829]],PARAMETER[\"Latitude of standard parallel\",-70,ANGLEUNIT[\"degree\",0.0174532925199433],ID[\"EPSG\",8832]],PARAMETER[\"Longitude of origin\",0,ANGLEUNIT[\"degree\",0.0174532925199433],ID[\"EPSG\",8833]],PARAMETER[\"False easting\",0,LENGTHUNIT[\"metre\",1],ID[\"EPSG\",8806]],PARAMETER[\"False northing\",0,LENGTHUNIT[\"metre\",1],ID[\"EPSG\",8807]]],CS[Cartesian,2],AXIS[\"(E)\",north,MERIDIAN[90,ANGLEUNIT[\"degree\",0.0174532925199433,ID[\"EPSG\",9122]]],ORDER[1],LENGTHUNIT[\"metre\",1,ID[\"EPSG\",9001]]],AXIS[\"(N)\",north,MERIDIAN[0,ANGLEUNIT[\"degree\",0.0174532925199433,ID[\"EPSG\",9122]]],ORDER[2],LENGTHUNIT[\"metre\",1,ID[\"EPSG\",9001]]]]", + "proj:shape": [ + 332, + 316 + ], + "proj:transform": [ + 25000.0, + 0.0, + -3950000.0, + 0.0, + -25000.0, + 4350000.0 + ], + "datetime": null + }, + "geometry": { + "type": "Polygon", + "coordinates": [ + [ + [ + 180.0, + -90.0 + ], + [ + 180.0, + -41.45 + ], + [ + -180.0, + -41.45 + ], + [ + -180.0, + -90.0 + ], + [ + 180.0, + -90.0 + ] + ] + ] + }, + "links": [], + "assets": { + "netcdf": { + "href": "https://noaadata.apps.nsidc.org/NOAA/G02202_V4/south/aggregate/seaice_conc_daily_sh_2023_v04r00.nc", + "type": "application/x-netcdf", + "title": "NOAA/NSIDC Climate Data Record of Passive Microwave Sea Ice Concentration Version 4 NetCDF", + "description": "This data set provides a passive microwave sea ice concentration climate data record (CDR) based on gridded brightness temperatures (TBs) from the Defense Meteorological Satellite Program (DMSP) series of passive microwave radiometers: the Nimbus-7 Scanning Multichannel Microwave Radiometer (SMMR), the Special Sensor Microwave Imager (SSM/I) and the Special Sensor Microwave Imager/Sounder (SSMIS). 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Data are available via FTP.", + "created": "2023-09-26T20:17:19Z", + "platform": "DMSP 5D-3/F17 > Defense Meteorological Satellite Program-F17", + "instruments": "SSMI/S > Special Sensor Microwave Imager/Sounder", + "roles": [ + "data" + ] + } + }, + "bbox": [ + -180.0, + -90.0, + 180.0, + -41.45 + ], + "stac_extensions": [ + "https://stac-extensions.github.io/processing/v1.1.0/schema.json", + "https://stac-extensions.github.io/projection/v1.1.0/schema.json" + ] +} \ No newline at end of file diff --git a/examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_monthly_sh_197811_202312_v04r00.json b/examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_monthly_sh_197811_202312_v04r00.json new file mode 100644 index 0000000..543c90c --- /dev/null +++ b/examples/noaa-cdr-sea-ice-concentration/south/seaice_conc_monthly_sh_197811_202312_v04r00.json @@ -0,0 +1,89 @@ +{ + "type": "Feature", + "stac_version": "1.0.0", + "id": "seaice_conc_monthly_sh_197811_202312_v04r00", + "properties": { + "start_datetime": "1978-11-01T00:00:00Z", + "end_datetime": "2023-12-31T23:59:59Z", + "noaa_cdr:interval": "monthly", + "processing:level": "L3", + "proj:epsg": null, + "proj:wkt2": "PROJCRS[\"unknown\",BASEGEOGCRS[\"unknown\",DATUM[\"unknown\",ELLIPSOID[\"unknown\",6378273,298.279411123064,LENGTHUNIT[\"metre\",1,ID[\"EPSG\",9001]]]],PRIMEM[\"Greenwich\",0,ANGLEUNIT[\"degree\",0.0174532925199433],ID[\"EPSG\",8901]]],CONVERSION[\"unknown\",METHOD[\"Polar Stereographic (variant B)\",ID[\"EPSG\",9829]],PARAMETER[\"Latitude of standard parallel\",-70,ANGLEUNIT[\"degree\",0.0174532925199433],ID[\"EPSG\",8832]],PARAMETER[\"Longitude of origin\",0,ANGLEUNIT[\"degree\",0.0174532925199433],ID[\"EPSG\",8833]],PARAMETER[\"False easting\",0,LENGTHUNIT[\"metre\",1],ID[\"EPSG\",8806]],PARAMETER[\"False northing\",0,LENGTHUNIT[\"metre\",1],ID[\"EPSG\",8807]]],CS[Cartesian,2],AXIS[\"(E)\",north,MERIDIAN[90,ANGLEUNIT[\"degree\",0.0174532925199433,ID[\"EPSG\",9122]]],ORDER[1],LENGTHUNIT[\"metre\",1,ID[\"EPSG\",9001]]],AXIS[\"(N)\",north,MERIDIAN[0,ANGLEUNIT[\"degree\",0.0174532925199433,ID[\"EPSG\",9122]]],ORDER[2],LENGTHUNIT[\"metre\",1,ID[\"EPSG\",9001]]]]", + "proj:shape": [ + 332, + 316 + ], + "proj:transform": [ + 25000.0, + 0.0, + -3950000.0, + 0.0, + -25000.0, + 4350000.0 + ], + "datetime": null + }, + "geometry": { + "type": "Polygon", + "coordinates": [ + [ + [ + 180.0, + -90.0 + ], + [ + 180.0, + -41.45 + ], + [ + -180.0, + -41.45 + ], + [ + -180.0, + -90.0 + ], + [ + 180.0, + -90.0 + ] + ] + ] + }, + "links": [ + { + "rel": "root", + "href": "../collection.json", + "type": "application/json", + "title": "Sea Ice Concentration CDR" + }, + { + "rel": "parent", + "href": "../collection.json", + "type": "application/json", + "title": "Sea Ice Concentration CDR" + } + ], + "assets": { + "netcdf": { + "href": "https://noaadata.apps.nsidc.org/NOAA/G02202_V4/south/aggregate/seaice_conc_monthly_sh_197811_202312_v04r00.nc", + "type": "application/x-netcdf", + "title": "NOAA/NSIDC Climate Data Record of Passive Microwave Sea Ice Concentration Version 4 NetCDF", + "description": "This data set provides a passive microwave sea ice concentration climate data record (CDR) based on gridded brightness temperatures (TBs) from the Defense Meteorological Satellite Program (DMSP) series of passive microwave radiometers: the Nimbus-7 Scanning Multichannel Microwave Radiometer (SMMR), the Special Sensor Microwave Imager (SSM/I) and the Special Sensor Microwave Imager/Sounder (SSMIS). The sea ice concentration CDR is an estimate of sea ice concentration that is produced by combining concentration estimates from two algorithms developed at the NASA Goddard Space Flight Center (GSFC): the NASA Team algorithm and the Bootstrap algorithm. The individual algorithms are used to process and combine brightness temperature data at NSIDC. This product is designed to provide a consistent time series of sea ice concentrations (the fraction, or percentage, of ocean area covered by sea ice) from November 1978 to the present which spans the coverage of several passive microwave instruments. The data are gridded on the NSIDC polar stereographic grid with 25 x 25 km grid cells, and are available in NetCDF file format. Each file contains a variable with the CDR concentration values as well as variables that hold the NASA Team and Bootstrap concentrations for reference. Variables containing standard deviation, quality flags, and projection information are also included. Data are available via FTP.", + "created": "2021-06-22T15:54:57Z", + "roles": [ + "data" + ] + } + }, + "bbox": [ + -180.0, + -90.0, + 180.0, + -41.45 + ], + "stac_extensions": [ + "https://stac-extensions.github.io/processing/v1.1.0/schema.json", + "https://stac-extensions.github.io/projection/v1.1.0/schema.json" + ] +} \ No newline at end of file diff --git a/mypy.ini b/mypy.ini index 3c0b760..f880541 100644 --- a/mypy.ini +++ b/mypy.ini @@ -3,4 +3,4 @@ mypy_path = src explicit_package_bases = True namespace_packages = True show_error_codes = True -strict = True \ No newline at end of file +strict = True diff --git a/scripts/create_examples.py b/scripts/create_examples.py index e37b31b..ec3c0d8 100755 --- a/scripts/create_examples.py +++ b/scripts/create_examples.py @@ -17,9 +17,8 @@ from tempfile import TemporaryDirectory import stactools.core.copy -from pystac import Catalog, CatalogType - import stactools.noaa_cdr.stac +from pystac import Catalog, CatalogType from stactools.noaa_cdr.ocean_heat_content import stac as ocean_heat_content_stac from stactools.noaa_cdr.sea_ice_concentration import stac as sea_ice_concentration_stac from stactools.noaa_cdr.sea_surface_temperature_optimum_interpolation import ( diff --git a/scripts/create_item_assets.py b/scripts/create_item_assets.py index d0111fa..2d6cf22 100755 --- a/scripts/create_item_assets.py +++ b/scripts/create_item_assets.py @@ -11,9 +11,8 @@ from tempfile import TemporaryDirectory import orjson -from pystac import Item - import stactools.noaa_cdr.stac +from pystac import Item from stactools.noaa_cdr.sea_ice_concentration import stac as sea_ice_stac from stactools.noaa_cdr.sea_surface_temperature_optimum_interpolation import ( stac as oisst_stac, diff --git a/scripts/extract_netcdf_asset_metadata.py b/scripts/extract_netcdf_asset_metadata.py index 5a19ba7..96d7352 100755 --- a/scripts/extract_netcdf_asset_metadata.py +++ b/scripts/extract_netcdf_asset_metadata.py @@ -18,11 +18,10 @@ from typing import Dict import fsspec +import stactools.noaa_cdr.ocean_heat_content import xarray from tqdm import tqdm -import stactools.noaa_cdr.ocean_heat_content - metadata: Dict[str, Dict[str, str]] = {} for href in tqdm(list(stactools.noaa_cdr.ocean_heat_content.iter_noaa_hrefs())): key = os.path.splitext(os.path.basename(href))[0] diff --git a/src/stactools/noaa_cdr/profile.py b/src/stactools/noaa_cdr/profile.py index 0e6d0f6..d518d62 100644 --- a/src/stactools/noaa_cdr/profile.py +++ b/src/stactools/noaa_cdr/profile.py @@ -128,7 +128,8 @@ def build( ) if not data_type: raise ValueError( - f"No raster extension DataType found for numpy dtype: {data_array.dtype}" + f"No raster extension DataType found for numpy dtype:" + f"{data_array.dtype}" ) if data_type.startswith("float"): nodata: Any = numpy.nan @@ -221,7 +222,8 @@ def needs_vertical_flip(self) -> bool: def _parse_resolution(value: Any) -> float: if isinstance(value, str): - # Assume that the first part is a number and the rest are units, e.g. for ocean heat content + # Assume that the first part is a number and the rest are units, + # e.g. for ocean heat content return float(value.split(" ")[0]) else: return float(value) diff --git a/src/stactools/noaa_cdr/sea_ice_concentration/commands.py b/src/stactools/noaa_cdr/sea_ice_concentration/commands.py index c571af0..e439dc9 100644 --- a/src/stactools/noaa_cdr/sea_ice_concentration/commands.py +++ b/src/stactools/noaa_cdr/sea_ice_concentration/commands.py @@ -2,9 +2,8 @@ import click import pystac.utils -from click import Command, Group - import stactools.noaa_cdr.stac +from click import Command, Group from stactools.noaa_cdr.sea_ice_concentration import stac diff --git a/src/stactools/noaa_cdr/sea_ice_concentration/constants.py b/src/stactools/noaa_cdr/sea_ice_concentration/constants.py index 47fc66c..8b73e8f 100644 --- a/src/stactools/noaa_cdr/sea_ice_concentration/constants.py +++ b/src/stactools/noaa_cdr/sea_ice_concentration/constants.py @@ -67,16 +67,13 @@ "https://nsidc.org/data/g02202/versions/4", ) ] -LICENSE_LINK = Link( - "license", - ( - "https://www.ncei.noaa.gov/pub/data/sds/cdr/CDRs/" - "Sea_Ice_Concentration/UseAgreement_01B-11.pdf" - ), - MediaType.PDF, - "NOAA CDR Sea Ice Concentration Use Agreement", -) -KEYWORDS = COMMON_KEYWORDS + ["Sea ice", "Polar"] +KEYWORDS = COMMON_KEYWORDS + [ + "Sea ice", + "Polar", + "Earth Science", + "Cryosphere", + "Sea ice concentration", +] KEYWORDS.remove("Global") ITEM_ASSETS = orjson.loads( importlib_resources.files("stactools.noaa_cdr.sea_ice_concentration") @@ -89,4 +86,11 @@ media_type=MediaType.HTML, title="Sea Ice Concentration CDR", ) +# Want to include this because the user guide will always be findable here. +DATA_HOMEPAGE_LINK = Link( + target=("https://nsidc.org/data/g02202/versions/4"), + rel="about", + media_type=MediaType.HTML, + title="CDR Homepage", +) SPATIAL_RESOLUTION = 25000.0 diff --git a/src/stactools/noaa_cdr/sea_ice_concentration/stac.py b/src/stactools/noaa_cdr/sea_ice_concentration/stac.py index 5573b1b..1dcc7cf 100644 --- a/src/stactools/noaa_cdr/sea_ice_concentration/stac.py +++ b/src/stactools/noaa_cdr/sea_ice_concentration/stac.py @@ -14,6 +14,7 @@ from . import cog from .constants import ( CITATION, + DATA_HOMEPAGE_LINK, DESCRIPTION, DOI, EXTENT, @@ -21,7 +22,6 @@ ID, ITEM_ASSETS, KEYWORDS, - LICENSE_LINK, PROVIDERS, TITLE, ) @@ -51,9 +51,10 @@ def create_collection() -> Collection: catalog_type=DEFAULT_CATALOG_TYPE, providers=PROVIDERS, keywords=KEYWORDS, + license="proprietary", ) - collection.add_link(LICENSE_LINK) + collection.add_link(DATA_HOMEPAGE_LINK) collection.add_link(HOMEPAGE_LINK) item_assets = ItemAssetsExtension.ext(collection, add_if_missing=True) diff --git a/src/stactools/noaa_cdr/sea_surface_temperature_optimum_interpolation/commands.py b/src/stactools/noaa_cdr/sea_surface_temperature_optimum_interpolation/commands.py index e9754f6..8ef1626 100644 --- a/src/stactools/noaa_cdr/sea_surface_temperature_optimum_interpolation/commands.py +++ b/src/stactools/noaa_cdr/sea_surface_temperature_optimum_interpolation/commands.py @@ -2,11 +2,10 @@ import click import pystac.utils +import stactools.noaa_cdr.stac from click import Command, Group from pystac import CatalogType -import stactools.noaa_cdr.stac - from . import stac diff --git a/src/stactools/noaa_cdr/sea_surface_temperature_whoi/commands.py b/src/stactools/noaa_cdr/sea_surface_temperature_whoi/commands.py index c444e32..4f0533c 100644 --- a/src/stactools/noaa_cdr/sea_surface_temperature_whoi/commands.py +++ b/src/stactools/noaa_cdr/sea_surface_temperature_whoi/commands.py @@ -4,7 +4,6 @@ import pystac.utils from click import Command, Group from pystac import ItemCollection - from stactools.noaa_cdr.sea_surface_temperature_whoi import stac diff --git a/src/stactools/noaa_cdr/sea_surface_temperature_whoi/stac.py b/src/stactools/noaa_cdr/sea_surface_temperature_whoi/stac.py index 37b4c44..d1c5ff7 100644 --- a/src/stactools/noaa_cdr/sea_surface_temperature_whoi/stac.py +++ b/src/stactools/noaa_cdr/sea_surface_temperature_whoi/stac.py @@ -9,7 +9,6 @@ from pystac.extensions.item_assets import AssetDefinition, ItemAssetsExtension from pystac.extensions.raster import RasterExtension from pystac.extensions.scientific import ScientificExtension - from stactools.noaa_cdr.profile import BandProfile from .. import cog, dataset, stac, time diff --git a/src/stactools/noaa_cdr/stac.py b/src/stactools/noaa_cdr/stac.py index d234e5b..7e80e2f 100644 --- a/src/stactools/noaa_cdr/stac.py +++ b/src/stactools/noaa_cdr/stac.py @@ -75,6 +75,8 @@ def create_item( roles=["data"], ) asset.common_metadata.created = dateutil.parser.parse(ds.date_created) + asset.common_metadata.platform = ds.platform + asset.common_metadata.instruments = [ds.sensor] if "date_modified" in ds.attrs: asset.common_metadata.updated = dateutil.parser.parse(ds.date_modified) item.assets[NETCDF_ASSET_KEY] = asset diff --git a/tests/__init__.py b/tests/__init__.py index 075bbae..2f5de4f 100644 --- a/tests/__init__.py +++ b/tests/__init__.py @@ -3,10 +3,9 @@ import click from click.testing import CliRunner, Result -from stactools.testing.test_data import TestData - from stactools.noaa_cdr import ocean_heat_content from stactools.noaa_cdr.commands import create_noaa_cdr_command +from stactools.testing.test_data import TestData external_data: Dict[str, Any] = { "oisst-avhrr-v02r01.20220913.nc": { diff --git a/tests/sea_ice_concentration/test_stac.py b/tests/sea_ice_concentration/test_stac.py index 059dbe9..918ded2 100644 --- a/tests/sea_ice_concentration/test_stac.py +++ b/tests/sea_ice_concentration/test_stac.py @@ -6,7 +6,6 @@ from pystac.extensions.projection import ProjectionExtension from pystac.extensions.raster import RasterExtension from pystac.extensions.scientific import ScientificExtension - from stactools.noaa_cdr.constants import CLASSIFICATION_EXTENSION_SCHEMA from stactools.noaa_cdr.sea_ice_concentration import cog, stac diff --git a/tests/sea_surface_temperature_whoi/test_commands.py b/tests/sea_surface_temperature_whoi/test_commands.py index c307f2f..dafdce6 100644 --- a/tests/sea_surface_temperature_whoi/test_commands.py +++ b/tests/sea_surface_temperature_whoi/test_commands.py @@ -12,7 +12,8 @@ def test_create_cog_items(tmp_path: Path) -> None: "SEAFLUX-OSB-CDR_V02R00_SST_D20210831_C20211223.nc" ) result = run_command( - f"noaa-cdr sea-surface-temperature-whoi create-cog-items {path} {tmp_path}/out.json" + f"noaa-cdr sea-surface-temperature-whoi create-cog-items {path} {tmp_path}" + "/out.json" ) assert result.exit_code == 0, result.output item_collection = ItemCollection.from_file(str(tmp_path / "out.json")) diff --git a/tests/test_profile.py b/tests/test_profile.py index 3edf129..7fe96b6 100644 --- a/tests/test_profile.py +++ b/tests/test_profile.py @@ -1,5 +1,4 @@ import xarray - from stactools.noaa_cdr.profile import BandProfile from . import test_data diff --git a/tests/test_time.py b/tests/test_time.py index 40f04c7..d22f43a 100644 --- a/tests/test_time.py +++ b/tests/test_time.py @@ -2,7 +2,6 @@ from typing import Tuple import pytest - from stactools.noaa_cdr import time from stactools.noaa_cdr.time import TimeResolution