Fix compilation failures for Stan models with #include statements
#1933
Workflow file for this run
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| --- | |
| # Github Actions workflow to check CmdStanR | |
| # yamllint disable rule:line-length | |
| name: Unit tests | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'devel', rtools: ''} | |
| - {os: macOS-latest, r: 'release', rtools: ''} | |
| - {os: windows-latest, r: 'devel', rtools: '44'} | |
| - {os: windows-latest, r: 'release', rtools: '44'} | |
| - {os: windows-latest, r: 'oldrel', rtools: '43'} | |
| - {os: ubuntu-latest, r: 'devel', rtools: ''} | |
| - {os: ubuntu-latest, r: 'release', rtools: ''} | |
| - {os: ubuntu-latest, r: 'oldrel', rtools: ''} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| steps: | |
| - name: cmdstan env vars | |
| run: | | |
| echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Use stock RTools for Windows R-Devel | |
| if: ${{ matrix.config.os == 'windows-latest' && matrix.config.r == 'devel' }} | |
| run: | | |
| echo "CMDSTANR_USE_RTOOLS=TRUE" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: n1hility/cancel-previous-runs@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master'" | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/[email protected] | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| rtools-version: ${{ matrix.config.rtools }} | |
| - uses: r-lib/actions/[email protected] | |
| - uses: r-lib/actions/[email protected] | |
| with: | |
| extra-packages: any::rcmdcheck, local::. | |
| - name: Install cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = 2) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/[email protected] | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |