Test pathfinder for initialization with psis_resample=FALSE #647
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| --- | |
| # Github Actions workflow to check CmdStanR | |
| # yamllint disable rule:line-length | |
| name: Unit tests - WSL Backend | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| WSL-R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: windows-latest | |
| name: windows-latest-WSLv1 | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| steps: | |
| - name: cmdstan env vars | |
| run: | | |
| echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: n1hility/cancel-previous-runs@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master'" | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/[email protected] | |
| - uses: r-lib/actions/[email protected] | |
| - uses: r-lib/actions/[email protected] | |
| with: | |
| extra-packages: any::rcmdcheck, local::. | |
| - uses: Vampire/setup-wsl@v3 | |
| with: | |
| distribution: Ubuntu-22.04 | |
| use-cache: 'false' | |
| set-as-default: 'true' | |
| - name: Install WSL Dependencies | |
| run: | | |
| # Bugfix for current gzip (for unpacking apt packages) under WSLv1: | |
| # https://github.com/microsoft/WSL/issues/8219#issuecomment-1110508016 | |
| echo -en '\x10' | sudo dd of=/usr/bin/gzip count=1 bs=1 conv=notrunc seek=$((0x189)) | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential libopenmpi-dev | |
| shell: wsl-bash {0} | |
| - name: Install cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = 2, wsl = TRUE, overwrite = TRUE) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/[email protected] | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wsl-backend-results | |
| path: check |