Fix packages with stanfunctions under rstan 2.33+ #38
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: Stanfunctions Support | |
| jobs: | |
| stanfunctions-support: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: local::. rcmdcheck BH RcppParallel RcppEigen Rcpp rstan StanHeaders RCurl remotes V8 | |
| - name: Checkout lgpr package | |
| run: | | |
| git clone https://github.com/andrjohns/lgpr | |
| git checkout array-syntax | |
| - name: Check against CRAN StanHeaders and CRAN RStan | |
| run: | | |
| rcmdcheck::rcmdcheck(path = "lgpr", args = c("--no-manual", "--as-cran"), build_args = "--no-manual") | |
| shell: Rscript {0} | |
| - name: Install Development StanHeaders and CRAN RStan | |
| run: | | |
| Sys.setenv(MAKEFLAGS=paste0("-j",parallel::detectCores())) | |
| install.packages("StanHeaders", repos = c("https://mc-stan.org/r-packages/", getOption("repos"))) | |
| install.packages('rstan', type='source') | |
| shell: Rscript {0} | |
| - name: Check against Development StanHeaders and CRAN RStan | |
| run: | | |
| rcmdcheck::rcmdcheck(path = "lgpr", args = c("--no-manual", "--as-cran"), build_args = "--no-manual") | |
| shell: Rscript {0} | |
| - name: Install Development StanHeaders and Development RStan | |
| run: | | |
| Sys.setenv(MAKEFLAGS=paste0("-j",parallel::detectCores())) | |
| install.packages("StanHeaders", repos = c("https://mc-stan.org/r-packages/", getOption("repos"))) | |
| install.packages("rstan", repos = c("https://mc-stan.org/r-packages/", getOption("repos"))) | |
| shell: Rscript {0} | |
| - name: Check against Development StanHeaders and Development RStan | |
| run: | | |
| rcmdcheck::rcmdcheck(path = "lgpr", args = c("--no-manual", "--as-cran"), build_args = "--no-manual") | |
| shell: Rscript {0} | |
| - name: Install Experimental StanHeaders and Experimental RStan | |
| run: | | |
| Sys.setenv(MAKEFLAGS=paste0("-j",parallel::detectCores())) | |
| remotes::install_github("stan-dev/rstan@experimental", subdir="StanHeaders") | |
| remotes::install_github("stan-dev/rstan@experimental", subdir="rstan/rstan") | |
| shell: Rscript {0} | |
| - name: Check against Experimental StanHeaders and Experimental RStan | |
| run: | | |
| rcmdcheck::rcmdcheck(path = "lgpr", args = c("--no-manual", "--as-cran"), build_args = "--no-manual") | |
| shell: Rscript {0} | |