diff --git a/includes/data/software.yml b/includes/data/software.yml index fe5f2f5b4..05fe1d886 100644 --- a/includes/data/software.yml +++ b/includes/data/software.yml @@ -2165,15 +2165,14 @@ software_modules: versions: - {description: Gmsh is an open source 3D finite element mesh generator with a built-in CAD engine and post-processor., markedDefault: false, versionName: 4.10.1} - - categories: math, deep learning - defaultVersionName: 0.15.1_py39 - description: Datasets, model architectures, and common image transformations - for computer vision for PyTorch. - package: py-torchvision - url: http://pytorch.org/vision + - categories: math, numerical library + defaultVersionName: 2.9.0 + description: FLINT is a C library for doing number theory. + package: flint + url: https://flintlib.org/ versions: - - {description: 'Datasets, model architectures, and common image transformations - for computer vision for PyTorch.', markedDefault: false, versionName: 0.15.1_py39} + - {description: FLINT is a C library for doing number theory., markedDefault: false, + versionName: 2.9.0} - categories: math, statistics defaultVersionName: 1.3.1093 description: RStudio is an integrated development environment (IDE) for R. It @@ -2186,15 +2185,15 @@ software_modules: R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management.', markedDefault: true, versionName: 1.3.1093} - - categories: math, computational geometry - defaultVersionName: 7.6.2 - description: Open CASCADE Technology (OCCT) is an open-source full-scale 3D - geometry library - package: opencascade - url: https://dev.opencascade.org/ - versions: - - {description: Open CASCADE Technology (OCCT) is an open-source full-scale - 3D geometry library, markedDefault: false, versionName: 7.6.2} + - categories: math, graph computing + defaultVersionName: '0.73' + description: A tool for computing automorphism groups and canonical forms of + graphs. + package: bliss + url: http://www.tcs.hut.fi/Software/bliss/ + versions: + - {description: A tool for computing automorphism groups and canonical forms + of graphs., markedDefault: false, versionName: '0.73'} - categories: math, optimization defaultVersionName: 3.3.0 description: Octeract Engine is a proprietary massively parallel deterministic @@ -2282,47 +2281,18 @@ software_modules: scipy, matplotlib, ipython, jupyter, pandas, sympy and nose.', family: sympy, markedDefault: true, versionName: 1.0_py27} - categories: math, statistics - defaultVersionName: '15' - description: Stata is a complete, integrated statistical software package that - provides everything you need for data analysis, data management, and graphics. - package: stata - url: https://www.stata.com + defaultVersionName: 2022.02.2-485 + description: RStudio is an integrated development environment (IDE) for R. It + includes a console, syntax-highlighting editor that supports direct code execution, + as well as tools for plotting, history, debugging and workspace management. + This is the X11/GUI version. + package: rstudio-desktop + url: http://www.rstudio.com versions: - - description: Stata is a complete, integrated statistical software package - that provides everything you need for data analysis, data management, and - graphics. - markedDefault: false - properties: - license: {restricted: 1} - versionName: '14' - - description: Stata is a complete, integrated statistical software package - that provides everything you need for data analysis, data management, and - graphics. - markedDefault: false - properties: - license: {restricted: 1} - versionName: '16' - - description: Stata is a complete, integrated statistical software package - that provides everything you need for data analysis, data management, and - graphics. - markedDefault: false - properties: - license: {restricted: 1} - versionName: '17' - - description: Stata is a complete, integrated statistical software package - that provides everything you need for data analysis, data management, and - graphics. - markedDefault: false - properties: - license: {restricted: 1} - versionName: '18' - - description: Stata is a complete, integrated statistical software package - that provides everything you need for data analysis, data management, and - graphics. - markedDefault: true - properties: - license: {restricted: 1} - versionName: '15' + - {description: 'RStudio is an integrated development environment (IDE) for + R. It includes a console, syntax-highlighting editor that supports direct + code execution, as well as tools for plotting, history, debugging and workspace + management. This is the X11/GUI version.', markedDefault: false, versionName: 2022.02.2-485} - categories: math, numerical library defaultVersionName: 0.4.7_py39 description: JAX is Autograd and XLA, brought together for high-performance @@ -2389,28 +2359,33 @@ software_modules: - {description: Just another Gibbs sampler (JAGS) is a program for simulation from Bayesian hierarchical models using Markov chain Monte Carlo (MCMC)., markedDefault: false, versionName: 4.3.1} + - categories: math, numerical library + defaultVersionName: 3.1.0 + description: libflame is a portable library for dense matrix computations, providing + much of the functionality present in LAPACK + package: libflame + url: https://github.com/amd/libflame + versions: + - {description: 'libflame is a portable library for dense matrix computations, + providing much of the functionality present in LAPACK', markedDefault: false, + versionName: '2.1'} + - {description: 'libflame is a portable library for dense matrix computations, + providing much of the functionality present in LAPACK', markedDefault: false, + versionName: 2.2.4} + - {description: 'libflame is a portable library for dense matrix computations, + providing much of the functionality present in LAPACK', markedDefault: false, + versionName: 3.1.0} - categories: math, deep learning - defaultVersionName: 1.8_py27 - description: TensorboardX is TensorBoard™ for PyTorch (and Chainer, MXNet, NumPy...) - package: py-tensorboardx - url: https://tensorboardx.readthedocs.io + defaultVersionName: 8.5.1.7_py39 + description: Python bindings for the TensorRT library. + package: py-tensorrt + url: https://developer.nvidia.com/tensorrt versions: - - description: TensorboardX is TensorBoard™ for PyTorch (and Chainer, MXNet, - NumPy...) + - description: Python bindings for the TensorRT library. markedDefault: false properties: arch: {gpu: 1} - versionName: 1.8_py27 - - categories: math, optimization - defaultVersionName: 2.10.0_py39 - description: Optuna is an automatic hyperparameter optimization software framework, - particularly designed for machine learning. - package: py-optuna - url: https://optuna.readthedocs.io/ - versions: - - {description: 'Optuna is an automatic hyperparameter optimization software - framework, particularly designed for machine learning.', markedDefault: false, - versionName: 2.10.0_py39} + versionName: 8.5.1.7_py39 - categories: math, numerical library defaultVersionName: 1.4.1 description: 'harminv is a program designed to solve the problem of harmonic @@ -2537,6 +2512,14 @@ software_modules: versions: - {description: Gym is a toolkit for developing and comparing reinforcement learning algorithms., markedDefault: false, versionName: 0.21.0_py39} + - categories: math, optimization + defaultVersionName: 2.6.2 + description: NLopt is a free/open-source library for nonlinear optimization. + package: nlopt + url: https://nlopt.readthedocs.io/ + versions: + - {description: NLopt is a free/open-source library for nonlinear optimization., + markedDefault: false, versionName: 2.6.2} - categories: math, numerical library defaultVersionName: 4.1.0 description: The MPFR library is a C library for multiple-precision floating-point @@ -2556,14 +2539,6 @@ software_modules: versions: - {description: 'glum is a fast, modern, Python-first GLM estimation library.', markedDefault: false, versionName: 2.1.2_py39} - - categories: math, optimization - defaultVersionName: 2.6.2 - description: NLopt is a free/open-source library for nonlinear optimization. - package: nlopt - url: https://nlopt.readthedocs.io/ - versions: - - {description: NLopt is a free/open-source library for nonlinear optimization., - markedDefault: false, versionName: 2.6.2} - categories: math, numerical library defaultVersionName: 3.18.5_py39 description: Python bindings for PETSc, the Portable, Extensible Toolkit for @@ -2573,6 +2548,49 @@ software_modules: versions: - {description: 'Python bindings for PETSc, the Portable, Extensible Toolkit for Scientific Computation.', markedDefault: false, versionName: 3.18.5_py39} + - categories: math, deep learning + defaultVersionName: 1.8_py27 + description: TensorboardX is TensorBoard™ for PyTorch (and Chainer, MXNet, NumPy...) + package: py-tensorboardx + url: https://tensorboardx.readthedocs.io + versions: + - description: TensorboardX is TensorBoard™ for PyTorch (and Chainer, MXNet, + NumPy...) + markedDefault: false + properties: + arch: {gpu: 1} + versionName: 1.8_py27 + - categories: math, numerical library + defaultVersionName: 3.18.5 + description: PETSc, the Portable, Extensible Toolkit for Scientific Computation, + is a suite of data structures and routines for the scalable (parallel) solution + of scientific applications modeled by partial differential equations. + package: petsc + url: http://petsc.org + versions: + - description: PETSc is a suite of data structures and routines for the scalable + (parallel) solution of scientific applications modeled by partial differential + equations. + markedDefault: false + properties: + parallel: {mpi: 1} + versionName: 3.10.3 + - description: PETSc, the Portable, Extensible Toolkit for Scientific Computation, + is a suite of data structures and routines for the scalable (parallel) solution + of scientific applications modeled by partial differential equations. + markedDefault: false + properties: + parallel: {mpi: 1} + versionName: 3.18.5 + - categories: math, numerical library + defaultVersionName: 2017.1_py27 + description: PyUblas provides a seamless glue layer between Numpy and Boost.Ublas + for use with Boost.Python. + package: py-pyublas + url: https://mathema.tician.de/software/pyublas/ + versions: + - {description: PyUblas provides a seamless glue layer between Numpy and Boost.Ublas + for use with Boost.Python., markedDefault: false, versionName: 2017.1_py27} - categories: math, statistics defaultVersionName: '1.3' description: GNU datamash is a command-line program which performs basic numeric, @@ -2583,19 +2601,19 @@ software_modules: - {description: 'GNU datamash is a command-line program which performs basic numeric, textual and statistical operations on input textual data files.', markedDefault: false, versionName: '1.3'} - - categories: math, linear algebra - defaultVersionName: 0.2.0.1 - description: NVIDIA cuSPARSELt is a high-performance CUDA library for sparse - matrix-matrix multiplication. - package: cusparselt - url: https://docs.nvidia.com/cuda/cusparselt/index.html + - categories: math, numerical library + defaultVersionName: 6.2.1 + description: GMP is a free library for arbitrary precision arithmetic, operating + on signed integers, rational numbers, and floating-point numbers. + package: gmp + url: https://gmplib.org versions: - - description: NVIDIA cuSPARSELt is a high-performance CUDA library for sparse - matrix-matrix multiplication. - markedDefault: false - properties: - arch: {gpu: 1} - versionName: 0.2.0.1 + - {description: 'GMP is a free library for arbitrary precision arithmetic, operating + on signed integers, rational numbers, and floating-point numbers.', markedDefault: false, + versionName: 6.1.2} + - {description: 'GMP is a free library for arbitrary precision arithmetic, operating + on signed integers, rational numbers, and floating-point numbers.', markedDefault: false, + versionName: 6.2.1} - categories: math, symbolic defaultVersionName: 1.1.11 description: GNU libmatheval is a library (callable from C and Fortran) to parse @@ -2619,6 +2637,19 @@ software_modules: properties: arch: {gpu: 1} versionName: 1.6.3_py27 + - categories: math, deep learning + defaultVersionName: '20180202' + description: Torch is a scientific computing framework with wide support for + machine learning algorithms that puts GPUs first. + package: torch + url: http://torch.ch + versions: + - description: Torch is a scientific computing framework with wide support for + machine learning algorithms that puts GPUs first. + markedDefault: false + properties: + arch: {gpu: 1} + versionName: '20180202' - categories: math, technical computing defaultVersionName: 13.1.0 description: A symbolic language and platform for modern technical computing. @@ -2630,15 +2661,6 @@ software_modules: properties: license: {restricted: 1} versionName: 13.1.0 - - categories: math, numerical library - defaultVersionName: 2017.1_py27 - description: PyUblas provides a seamless glue layer between Numpy and Boost.Ublas - for use with Boost.Python. - package: py-pyublas - url: https://mathema.tician.de/software/pyublas/ - versions: - - {description: PyUblas provides a seamless glue layer between Numpy and Boost.Ublas - for use with Boost.Python., markedDefault: false, versionName: 2017.1_py27} - categories: math, numerical library defaultVersionName: 0.3.10 description: OpenBLAS is an optimized BLAS library @@ -2655,27 +2677,16 @@ software_modules: versionName: 0.3.20} - {description: OpenBLAS is an optimized BLAS library, family: blas, markedDefault: true, versionName: 0.3.10} - - categories: math, deep learning - defaultVersionName: 0.12.1_py27 - description: Horovod is a distributed training framework for TensorFlow. The - goal of Horovod is to make distributed Deep Learning fast and easy to use. - package: py-horovod - url: https://github.com/uber/horovod + - categories: math, statistics + defaultVersionName: 2.9.2_py36 + description: rpy2 is an interface to R running embedded in a Python process. + package: py-rpy2 + url: https://rpy2.bitbucket.io versions: - - description: Horovod is a distributed training framework for TensorFlow. The - goal of Horovod is to make distributed Deep Learning fast and easy to use. - markedDefault: false - properties: - arch: {gpu: 1} - parallel: {mpi: 1} - versionName: 0.12.1_py36 - - description: Horovod is a distributed training framework for TensorFlow. The - goal of Horovod is to make distributed Deep Learning fast and easy to use. - markedDefault: true - properties: - arch: {gpu: 1} - parallel: {mpi: 1} - versionName: 0.12.1_py27 + - {description: rpy2 is an interface to R running embedded in a Python process., + markedDefault: false, versionName: 2.8.6_py27} + - {description: rpy2 is an interface to R running embedded in a Python process., + markedDefault: false, versionName: 2.9.2_py36} - categories: math, numerical library defaultVersionName: '2.7' description: The GNU Scientific Library (GSL) is a numerical library for C and @@ -2696,49 +2707,41 @@ software_modules: C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.', markedDefault: false, versionName: '2.7'} - - categories: math, numerical library - defaultVersionName: 1.14.3_py27 - description: NumPy is the fundamental package for scientific computing with - Python. - package: py-numpy - url: http://www.numpy.org + - categories: math, computational geometry + defaultVersionName: '4.10' + description: polymake is open source software for research in polyhedral geometry. + package: polymake + url: https://polymake.org versions: - - {description: NumPy is the fundamental package for scientific computing with - Python., markedDefault: false, versionName: 1.14.3_py36} - - {description: NumPy is the fundamental package for scientific computing with - Python., markedDefault: false, versionName: 1.17.2_py36} - - {description: NumPy is the fundamental package for scientific computing with - Python., markedDefault: false, versionName: 1.18.1_py36} - - {description: NumPy is the fundamental package for scientific computing with - Python., markedDefault: false, versionName: 1.19.2_py36} - - {description: NumPy is the fundamental package for scientific computing with - Python., markedDefault: false, versionName: 1.20.3_py39} - - {description: NumPy is the fundamental package for scientific computing with - Python., markedDefault: false, versionName: 1.24.2_py39} - - {description: NumPy is the fundamental package for scientific computing with - Python., markedDefault: true, versionName: 1.14.3_py27} + - {description: polymake is open source software for research in polyhedral + geometry., markedDefault: false, versionName: '4.10'} - categories: math, deep learning - defaultVersionName: '20180202' - description: Torch is a scientific computing framework with wide support for - machine learning algorithms that puts GPUs first. - package: torch - url: http://torch.ch + defaultVersionName: 1.0.1_py27 + description: Theano is a Python library that allows you to define, optimize, + and evaluate mathematical expressions involving multi-dimensional arrays efficiently. + package: py-theano + url: http://deeplearning.net/software/theano versions: - - description: Torch is a scientific computing framework with wide support for - machine learning algorithms that puts GPUs first. + - description: Theano is a Python library that allows you to define, optimize, + and evaluate mathematical expressions involving multi-dimensional arrays + efficiently. markedDefault: false properties: arch: {gpu: 1} - versionName: '20180202' - - categories: math, numerical library - defaultVersionName: 1.1.2 - description: qrupdate is a Fortran library for fast updates of QR and Cholesky - decompositions. - package: qrupdate - url: https://sourceforge.net/projects/qrupdate/ + versionName: 1.0.1_py27 + - categories: math, linear algebra + defaultVersionName: 0.2.0.1 + description: NVIDIA cuSPARSELt is a high-performance CUDA library for sparse + matrix-matrix multiplication. + package: cusparselt + url: https://docs.nvidia.com/cuda/cusparselt/index.html versions: - - {description: qrupdate is a Fortran library for fast updates of QR and Cholesky - decompositions., markedDefault: false, versionName: 1.1.2} + - description: NVIDIA cuSPARSELt is a high-performance CUDA library for sparse + matrix-matrix multiplication. + markedDefault: false + properties: + arch: {gpu: 1} + versionName: 0.2.0.1 - categories: math, deep learning defaultVersionName: 1.5.0.3 description: GPU-accelerated tensor linear algebra library. @@ -2755,20 +2758,15 @@ software_modules: properties: arch: {gpu: 1} versionName: 1.5.0.3 - - categories: math, deep learning - defaultVersionName: 1.0.1_py27 - description: Theano is a Python library that allows you to define, optimize, - and evaluate mathematical expressions involving multi-dimensional arrays efficiently. - package: py-theano - url: http://deeplearning.net/software/theano + - categories: math, numerical library + defaultVersionName: 1.1.2 + description: qrupdate is a Fortran library for fast updates of QR and Cholesky + decompositions. + package: qrupdate + url: https://sourceforge.net/projects/qrupdate/ versions: - - description: Theano is a Python library that allows you to define, optimize, - and evaluate mathematical expressions involving multi-dimensional arrays - efficiently. - markedDefault: false - properties: - arch: {gpu: 1} - versionName: 1.0.1_py27 + - {description: qrupdate is a Fortran library for fast updates of QR and Cholesky + decompositions., markedDefault: false, versionName: 1.1.2} - categories: math, numerical library defaultVersionName: 3.1.3 description: FlexiBLAS is a BLAS and LAPACK wrapper library with runtime exchangeable @@ -2795,55 +2793,15 @@ software_modules: versions: - {description: The MPI-IS Mesh Processing Library contains core functions for manipulating meshes and visualizing them., markedDefault: false, versionName: 0.4_py39} - - categories: math, numerical analysis - defaultVersionName: R2022b - description: MATLAB is a multi-paradigm numerical computing environment and - proprietary programming language developed by MathWorks. - package: matlab - url: https://www.mathworks.com/products/matlab.html + - categories: math, deep learning + defaultVersionName: 0.15.1_py39 + description: Datasets, model architectures, and common image transformations + for computer vision for PyTorch. + package: py-torchvision + url: http://pytorch.org/vision versions: - - description: MATLAB is a multi-paradigm numerical computing environment and - proprietary programming language developed by MathWorks. - help: https://www.sherlock.stanford.edu/docs/software/using/matlab - markedDefault: false - properties: - license: {restricted: 1} - versionName: R2017a - - description: MATLAB is a multi-paradigm numerical computing environment and - proprietary programming language developed by MathWorks. - help: https://www.sherlock.stanford.edu/docs/software/using/matlab - markedDefault: false - properties: - license: {restricted: 1} - versionName: R2017b - - description: MATLAB is a multi-paradigm numerical computing environment and - proprietary programming language developed by MathWorks. - help: https://www.sherlock.stanford.edu/docs/software/using/matlab - markedDefault: false - properties: - license: {restricted: 1} - versionName: R2018a - - description: MATLAB is a multi-paradigm numerical computing environment and - proprietary programming language developed by MathWorks. - help: https://www.sherlock.stanford.edu/docs/software/using/matlab - markedDefault: false - properties: - license: {restricted: 1} - versionName: R2019a - - description: MATLAB is a multi-paradigm numerical computing environment and - proprietary programming language developed by MathWorks. - help: https://www.sherlock.stanford.edu/docs/software/using/matlab - markedDefault: false - properties: - license: {restricted: 1} - versionName: R2020a - - description: MATLAB is a multi-paradigm numerical computing environment and - proprietary programming language developed by MathWorks. - help: https://www.sherlock.stanford.edu/docs/software/using/matlab - markedDefault: false - properties: - license: {restricted: 1} - versionName: R2022b + - {description: 'Datasets, model architectures, and common image transformations + for computer vision for PyTorch.', markedDefault: false, versionName: 0.15.1_py39} - categories: math, topic modelling defaultVersionName: 4.2.0_py39 description: Gensim is a Python library for topic modelling, document indexing @@ -2853,49 +2811,21 @@ software_modules: versions: - {description: 'Gensim is a Python library for topic modelling, document indexing and similarity retrieval with large corpora.', markedDefault: false, versionName: 4.2.0_py39} - - categories: math, deep learning - defaultVersionName: 2.1.5_py27 - description: Keras is a high-level neural networks API, written in Python and - capable of running on top of TensorFlow, CNTK, or Theano. - package: py-keras - url: http://keras.io + - categories: math, numerical library + defaultVersionName: 4.0.3 + description: ParMETIS is an MPI-based parallel library that implements a variety + of algorithms for partitioning unstructured graphs, meshes, and for computing + fill-reducing orderings of sparse matrices. + package: parmetis + url: http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview versions: - - description: Keras is a high-level neural networks API, written in Python - and capable of running on top of TensorFlow, CNTK, or Theano. - markedDefault: false - properties: - arch: {gpu: 1} - versionName: 2.0.8_py27 - - description: Keras is a high-level neural networks API, written in Python - and capable of running on top of TensorFlow, CNTK, or Theano. - markedDefault: false - properties: - arch: {gpu: 1} - versionName: 2.1.5_py36 - - description: Keras is a high-level neural networks API, written in Python - and capable of running on top of TensorFlow, CNTK, or Theano. - markedDefault: false - properties: - arch: {gpu: 1} - versionName: 2.2.4_py27 - - description: Keras is a high-level neural networks API, written in Python - and capable of running on top of TensorFlow, CNTK, or Theano. - markedDefault: false - properties: - arch: {gpu: 1} - versionName: 2.2.4_py36 - - description: Keras is a high-level neural networks API, written in Python - and capable of running on top of TensorFlow, CNTK, or Theano. + - description: ParMETIS is an MPI-based parallel library that implements a variety + of algorithms for partitioning unstructured graphs, meshes, and for computing + fill-reducing orderings of sparse matrices. markedDefault: false properties: - arch: {gpu: 1} - versionName: 2.3.1_py36 - - description: Keras is a high-level neural networks API, written in Python - and capable of running on top of TensorFlow, CNTK, or Theano. - markedDefault: true - properties: - arch: {gpu: 1} - versionName: 2.1.5_py27 + parallel: {mpi: 1} + versionName: 4.0.3 - categories: math, numerical library defaultVersionName: 3.9.0 description: Collection of Fortran77 subroutines designed to solve large scale @@ -2942,60 +2872,100 @@ software_modules: properties: parallel: {mpi: 1} versionName: 2.2.0 - - categories: math, optimization - defaultVersionName: 10.0.1_py39 - description: The Gurobi Optimizer is a commercial optimization solver for mathematical - programming. - package: gurobi - url: http://www.gurobi.com + - categories: math, symbolic + defaultVersionName: 0.12.3_py39 + description: High-Performance Symbolic Regression in Python and Julia. + package: py-pysr + url: https://github.com/MilesCranmer/PySR versions: - - {description: The Gurobi Optimizer is a commercial optimization solver for - mathematical programming., markedDefault: false, versionName: 7.5.1} - - {description: The Gurobi Optimizer is a commercial optimization solver for - mathematical programming., markedDefault: false, versionName: 8.0.1_py27} - - {description: The Gurobi Optimizer is a commercial optimization solver for - mathematical programming., markedDefault: false, versionName: 8.0.1_py36} - - {description: The Gurobi Optimizer is a commercial optimization solver for - mathematical programming., markedDefault: false, versionName: 9.0.3_py36} - - {description: The Gurobi Optimizer is a commercial optimization solver for - mathematical programming., markedDefault: false, versionName: 10.0.1_py39} + - {description: High-Performance Symbolic Regression in Python and Julia., markedDefault: false, + versionName: 0.12.3_py39} - categories: math, numerical library - defaultVersionName: 2.0.8_py36 - description: gmpy2 is a C-coded Python extension module that supports multiple-precision - arithmetic. - package: py-gmpy2 - url: https://gmpy2.readthedocs.io/ + defaultVersionName: 3.18.2_py39 + description: Python bindings for SLEPc. + package: py-slepc4py + url: https://slepc.upv.es/ versions: - - {description: gmpy2 is a C-coded Python extension module that supports multiple-precision - arithmetic., markedDefault: false, versionName: 2.0.8_py36} + - {description: Python bindings for SLEPc., markedDefault: false, versionName: 3.18.2_py39} - categories: math, numerical library - defaultVersionName: 6.2.1 - description: GMP is a free library for arbitrary precision arithmetic, operating - on signed integers, rational numbers, and floating-point numbers. - package: gmp - url: https://gmplib.org + defaultVersionName: 3.3.10 + description: The Fastest Fourier Transform in the West (FFTW) is a software + library for computing discrete Fourier transforms (DFTs). + package: fftw + url: http://www.fftw.org/ versions: - - {description: 'GMP is a free library for arbitrary precision arithmetic, operating - on signed integers, rational numbers, and floating-point numbers.', markedDefault: false, - versionName: 6.1.2} - - {description: 'GMP is a free library for arbitrary precision arithmetic, operating - on signed integers, rational numbers, and floating-point numbers.', markedDefault: false, - versionName: 6.2.1} - - categories: math, statistics - defaultVersionName: '9.4' - description: SAS is a software suite developed by SAS Institute for advanced - analytics, multivariate analyses, business intelligence, data management, - and predictive analytics. - package: sas - url: http://www.sas.com/ + - {description: The Fastest Fourier Transform in the West (FFTW) is a software + library for computing discrete Fourier transforms (DFTs)., markedDefault: false, + versionName: 2.1.5} + - description: The Fastest Fourier Transform in the West (FFTW) is a software + library for computing discrete Fourier transforms (DFTs). + markedDefault: false + properties: + parallel: {mpi: 1} + versionName: 3.3.6 + - description: The Fastest Fourier Transform in the West (FFTW) is a software + library for computing discrete Fourier transforms (DFTs). + markedDefault: false + properties: + parallel: {mpi: 1} + versionName: 3.3.8 + - {description: The Fastest Fourier Transform in the West (FFTW) is a software + library for computing discrete Fourier transforms (DFTs)., markedDefault: false, + versionName: 3.3.9} + - description: The Fastest Fourier Transform in the West (FFTW) is a software + library for computing discrete Fourier transforms (DFTs). + markedDefault: false + properties: + parallel: {mpi: 1} + versionName: 3.3.10 + - categories: math, numerical library + defaultVersionName: 6.0.4 + description: Software package and libraries for sequential and parallel graph + partitioning, static mapping and clustering, sequential mesh and hypergraph + partitioning, and sequential and parallel sparse matrix block ordering. + package: scotch + url: http://www.labri.fr/perso/pelegrin/scotch versions: - - description: SAS is a software suite developed by SAS Institute for advanced - analytics, multivariate analyses, business intelligence, data management, - and predictive analytics. + - description: Software package and libraries for sequential and parallel graph + partitioning, static mapping and clustering, sequential mesh and hypergraph + partitioning, and sequential and parallel sparse matrix block ordering. markedDefault: false properties: - license: {restricted: 1} - versionName: '9.4' + parallel: {mpi: 1} + versionName: 6.0.4 + - categories: math, numerical library + defaultVersionName: '4.63' + description: The GLPK (GNU Linear Programming Kit) package is intended for solving + large-scale linear programming (LP), mixed integer programming (MIP), and + other related problems. + package: glpk + url: http://www.openblas.net/ + versions: + - {description: 'The GLPK (GNU Linear Programming Kit) package is intended for + solving large-scale linear programming (LP), mixed integer programming (MIP), + and other related problems.', markedDefault: false, versionName: '4.63'} + - categories: math, optimization + defaultVersionName: 10.3.0 + description: Artelys Knitro is an optimization solver for difficult large-scale + nonlinear problems. + package: knitro + url: https://www.artelys.com/en/optimization-tools/knitro + versions: + - {description: Artelys Knitro is an optimization solver for difficult large-scale + nonlinear problems., markedDefault: false, versionName: 12.4.0} + - {description: Artelys Knitro is an optimization solver for difficult large-scale + nonlinear problems., markedDefault: true, versionName: 10.3.0} + - categories: math, numerical library + defaultVersionName: 3.18.2 + description: SLEPc is a Scalable Library for Eigenvalue Problem Computations. + package: slepc + url: https://slepc.upv.es/ + versions: + - description: SLEPc is a Scalable Library for Eigenvalue Problem Computations. + markedDefault: false + properties: + parallel: {mpi: 1} + versionName: 3.18.2 - categories: math, numerical library defaultVersionName: 1.2.1 description: GNU MPC is a C library for the arithmetic of complex numbers with @@ -3006,6 +2976,30 @@ software_modules: - {description: GNU MPC is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result., markedDefault: false, versionName: 1.2.1} + - categories: math, computational geometry + defaultVersionName: '2015.2' + description: Qhull computes the convex hull, Delaunay triangulation, Voronoi + diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, + and furthest-site Voronoi diagram. + package: qhull + url: http://www.qhull.org/ + versions: + - {description: 'Qhull computes the convex hull, Delaunay triangulation, Voronoi + diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, + and furthest-site Voronoi diagram.', markedDefault: false, versionName: '2015.2'} + - categories: math, numerical library + defaultVersionName: 1.0_py39 + description: Autograd can automatically differentiate native Python and Numpy + code. + package: py-autograd + url: https://github.com/HIPS/autograd + versions: + - description: Autograd can automatically differentiate native Python and Numpy + code. + markedDefault: false + properties: + parallel: {mpi: 1} + versionName: 1.0_py39 - categories: math, deep learning defaultVersionName: 8.9.0.131 description: NVIDIA cuDNN is a GPU-accelerated library of primitives for deep @@ -3085,98 +3079,64 @@ software_modules: properties: arch: {gpu: 1} versionName: 8.9.0.131 - - categories: math, numerical library - defaultVersionName: 3.18.2 - description: SLEPc is a Scalable Library for Eigenvalue Problem Computations. - package: slepc - url: https://slepc.upv.es/ + - categories: math, statistics + defaultVersionName: '15' + description: Stata is a complete, integrated statistical software package that + provides everything you need for data analysis, data management, and graphics. + package: stata + url: https://www.stata.com versions: - - description: SLEPc is a Scalable Library for Eigenvalue Problem Computations. + - description: Stata is a complete, integrated statistical software package + that provides everything you need for data analysis, data management, and + graphics. markedDefault: false properties: - parallel: {mpi: 1} - versionName: 3.18.2 - - categories: math, numerical library - defaultVersionName: 3.3.10 - description: The Fastest Fourier Transform in the West (FFTW) is a software - library for computing discrete Fourier transforms (DFTs). - package: fftw - url: http://www.fftw.org/ - versions: - - {description: The Fastest Fourier Transform in the West (FFTW) is a software - library for computing discrete Fourier transforms (DFTs)., markedDefault: false, - versionName: 2.1.5} - - description: The Fastest Fourier Transform in the West (FFTW) is a software - library for computing discrete Fourier transforms (DFTs). + license: {restricted: 1} + versionName: '14' + - description: Stata is a complete, integrated statistical software package + that provides everything you need for data analysis, data management, and + graphics. markedDefault: false properties: - parallel: {mpi: 1} - versionName: 3.3.6 - - description: The Fastest Fourier Transform in the West (FFTW) is a software - library for computing discrete Fourier transforms (DFTs). + license: {restricted: 1} + versionName: '16' + - description: Stata is a complete, integrated statistical software package + that provides everything you need for data analysis, data management, and + graphics. markedDefault: false properties: - parallel: {mpi: 1} - versionName: 3.3.8 - - {description: The Fastest Fourier Transform in the West (FFTW) is a software - library for computing discrete Fourier transforms (DFTs)., markedDefault: false, - versionName: 3.3.9} - - description: The Fastest Fourier Transform in the West (FFTW) is a software - library for computing discrete Fourier transforms (DFTs). + license: {restricted: 1} + versionName: '17' + - description: Stata is a complete, integrated statistical software package + that provides everything you need for data analysis, data management, and + graphics. markedDefault: false properties: - parallel: {mpi: 1} - versionName: 3.3.10 - - categories: math, computational geometry - defaultVersionName: '2015.2' - description: Qhull computes the convex hull, Delaunay triangulation, Voronoi - diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, - and furthest-site Voronoi diagram. - package: qhull - url: http://www.qhull.org/ - versions: - - {description: 'Qhull computes the convex hull, Delaunay triangulation, Voronoi - diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, - and furthest-site Voronoi diagram.', markedDefault: false, versionName: '2015.2'} - - categories: math, numerical library - defaultVersionName: 1.0_py39 - description: Autograd can automatically differentiate native Python and Numpy - code. - package: py-autograd - url: https://github.com/HIPS/autograd - versions: - - description: Autograd can automatically differentiate native Python and Numpy - code. - markedDefault: false + license: {restricted: 1} + versionName: '18' + - description: Stata is a complete, integrated statistical software package + that provides everything you need for data analysis, data management, and + graphics. + markedDefault: true properties: - parallel: {mpi: 1} - versionName: 1.0_py39 - - categories: math, numerical library - defaultVersionName: '4.63' - description: The GLPK (GNU Linear Programming Kit) package is intended for solving - large-scale linear programming (LP), mixed integer programming (MIP), and - other related problems. - package: glpk - url: http://www.openblas.net/ - versions: - - {description: 'The GLPK (GNU Linear Programming Kit) package is intended for - solving large-scale linear programming (LP), mixed integer programming (MIP), - and other related problems.', markedDefault: false, versionName: '4.63'} + license: {restricted: 1} + versionName: '15' - categories: math, numerical library - defaultVersionName: 4.0.3 - description: ParMETIS is an MPI-based parallel library that implements a variety - of algorithms for partitioning unstructured graphs, meshes, and for computing - fill-reducing orderings of sparse matrices. - package: parmetis - url: http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview + defaultVersionName: 3.1.0 + description: BLIS is a portable software framework for instantiating high-performance + BLAS-like dense linear algebra libraries. + package: blis + url: https://github.com/amd/blis versions: - - description: ParMETIS is an MPI-based parallel library that implements a variety - of algorithms for partitioning unstructured graphs, meshes, and for computing - fill-reducing orderings of sparse matrices. - markedDefault: false - properties: - parallel: {mpi: 1} - versionName: 4.0.3 + - {description: BLIS is a portable software framework for instantiating high-performance + BLAS-like dense linear algebra libraries., family: blas, markedDefault: false, + versionName: '2.1'} + - {description: BLIS is a portable software framework for instantiating high-performance + BLAS-like dense linear algebra libraries., family: blas, markedDefault: false, + versionName: 2.2.4} + - {description: BLIS is a portable software framework for instantiating high-performance + BLAS-like dense linear algebra libraries., family: blas, markedDefault: false, + versionName: 3.1.0} - categories: math, optimization defaultVersionName: 6.4.1 description: SUNDIALS is a family of software packages providing robust and @@ -3188,43 +3148,58 @@ software_modules: - {description: SUNDIALS is a family of software packages providing robust and efficient time integrators and nonlinear solvers that can easily be incorporated into existing simulation codes., markedDefault: false, versionName: 6.4.1} + - categories: math, deep learning + defaultVersionName: 2.1.5_py27 + description: Keras is a high-level neural networks API, written in Python and + capable of running on top of TensorFlow, CNTK, or Theano. + package: py-keras + url: http://keras.io + versions: + - description: Keras is a high-level neural networks API, written in Python + and capable of running on top of TensorFlow, CNTK, or Theano. + markedDefault: false + properties: + arch: {gpu: 1} + versionName: 2.0.8_py27 + - description: Keras is a high-level neural networks API, written in Python + and capable of running on top of TensorFlow, CNTK, or Theano. + markedDefault: false + properties: + arch: {gpu: 1} + versionName: 2.1.5_py36 + - description: Keras is a high-level neural networks API, written in Python + and capable of running on top of TensorFlow, CNTK, or Theano. + markedDefault: false + properties: + arch: {gpu: 1} + versionName: 2.2.4_py27 + - description: Keras is a high-level neural networks API, written in Python + and capable of running on top of TensorFlow, CNTK, or Theano. + markedDefault: false + properties: + arch: {gpu: 1} + versionName: 2.2.4_py36 + - description: Keras is a high-level neural networks API, written in Python + and capable of running on top of TensorFlow, CNTK, or Theano. + markedDefault: false + properties: + arch: {gpu: 1} + versionName: 2.3.1_py36 + - description: Keras is a high-level neural networks API, written in Python + and capable of running on top of TensorFlow, CNTK, or Theano. + markedDefault: true + properties: + arch: {gpu: 1} + versionName: 2.1.5_py27 - categories: math, numerical library - defaultVersionName: 3.1.0 - description: BLIS is a portable software framework for instantiating high-performance - BLAS-like dense linear algebra libraries. - package: blis - url: https://github.com/amd/blis - versions: - - {description: BLIS is a portable software framework for instantiating high-performance - BLAS-like dense linear algebra libraries., family: blas, markedDefault: false, - versionName: '2.1'} - - {description: BLIS is a portable software framework for instantiating high-performance - BLAS-like dense linear algebra libraries., family: blas, markedDefault: false, - versionName: 2.2.4} - - {description: BLIS is a portable software framework for instantiating high-performance - BLAS-like dense linear algebra libraries., family: blas, markedDefault: false, - versionName: 3.1.0} - - categories: math, optimization - defaultVersionName: 10.3.0 - description: Artelys Knitro is an optimization solver for difficult large-scale - nonlinear problems. - package: knitro - url: https://www.artelys.com/en/optimization-tools/knitro - versions: - - {description: Artelys Knitro is an optimization solver for difficult large-scale - nonlinear problems., markedDefault: false, versionName: 12.4.0} - - {description: Artelys Knitro is an optimization solver for difficult large-scale - nonlinear problems., markedDefault: true, versionName: 10.3.0} - - categories: math, statistics - defaultVersionName: 2.9.2_py36 - description: rpy2 is an interface to R running embedded in a Python process. - package: py-rpy2 - url: https://rpy2.bitbucket.io + defaultVersionName: 2.0.8_py36 + description: gmpy2 is a C-coded Python extension module that supports multiple-precision + arithmetic. + package: py-gmpy2 + url: https://gmpy2.readthedocs.io/ versions: - - {description: rpy2 is an interface to R running embedded in a Python process., - markedDefault: false, versionName: 2.8.6_py27} - - {description: rpy2 is an interface to R running embedded in a Python process., - markedDefault: false, versionName: 2.9.2_py36} + - {description: gmpy2 is a C-coded Python extension module that supports multiple-precision + arithmetic., markedDefault: false, versionName: 2.0.8_py36} - categories: math, deep learning defaultVersionName: 1.12.0_py39 description: ONNX is a open format to represent deep learning models. @@ -3237,44 +3212,81 @@ software_modules: versionName: 1.8.1_py36} - {description: ONNX is a open format to represent deep learning models., markedDefault: false, versionName: 1.12.0_py39} - - categories: math, numerical library - defaultVersionName: 3.18.5 - description: PETSc, the Portable, Extensible Toolkit for Scientific Computation, - is a suite of data structures and routines for the scalable (parallel) solution - of scientific applications modeled by partial differential equations. - package: petsc - url: http://petsc.org + - categories: math, numerical analysis + defaultVersionName: R2022b + description: MATLAB is a multi-paradigm numerical computing environment and + proprietary programming language developed by MathWorks. + package: matlab + url: https://www.mathworks.com/products/matlab.html versions: - - description: PETSc is a suite of data structures and routines for the scalable - (parallel) solution of scientific applications modeled by partial differential - equations. + - description: MATLAB is a multi-paradigm numerical computing environment and + proprietary programming language developed by MathWorks. + help: https://www.sherlock.stanford.edu/docs/software/using/matlab markedDefault: false properties: - parallel: {mpi: 1} - versionName: 3.10.3 - - description: PETSc, the Portable, Extensible Toolkit for Scientific Computation, - is a suite of data structures and routines for the scalable (parallel) solution - of scientific applications modeled by partial differential equations. + license: {restricted: 1} + versionName: R2017a + - description: MATLAB is a multi-paradigm numerical computing environment and + proprietary programming language developed by MathWorks. + help: https://www.sherlock.stanford.edu/docs/software/using/matlab markedDefault: false properties: - parallel: {mpi: 1} - versionName: 3.18.5 - - categories: math, numerical library - defaultVersionName: 3.1.0 - description: libflame is a portable library for dense matrix computations, providing - much of the functionality present in LAPACK - package: libflame - url: https://github.com/amd/libflame + license: {restricted: 1} + versionName: R2017b + - description: MATLAB is a multi-paradigm numerical computing environment and + proprietary programming language developed by MathWorks. + help: https://www.sherlock.stanford.edu/docs/software/using/matlab + markedDefault: false + properties: + license: {restricted: 1} + versionName: R2018a + - description: MATLAB is a multi-paradigm numerical computing environment and + proprietary programming language developed by MathWorks. + help: https://www.sherlock.stanford.edu/docs/software/using/matlab + markedDefault: false + properties: + license: {restricted: 1} + versionName: R2019a + - description: MATLAB is a multi-paradigm numerical computing environment and + proprietary programming language developed by MathWorks. + help: https://www.sherlock.stanford.edu/docs/software/using/matlab + markedDefault: false + properties: + license: {restricted: 1} + versionName: R2020a + - description: MATLAB is a multi-paradigm numerical computing environment and + proprietary programming language developed by MathWorks. + help: https://www.sherlock.stanford.edu/docs/software/using/matlab + markedDefault: false + properties: + license: {restricted: 1} + versionName: R2022b + - categories: math, optimization + defaultVersionName: 10.0.1_py39 + description: The Gurobi Optimizer is a commercial optimization solver for mathematical + programming. + package: gurobi + url: http://www.gurobi.com versions: - - {description: 'libflame is a portable library for dense matrix computations, - providing much of the functionality present in LAPACK', markedDefault: false, - versionName: '2.1'} - - {description: 'libflame is a portable library for dense matrix computations, - providing much of the functionality present in LAPACK', markedDefault: false, - versionName: 2.2.4} - - {description: 'libflame is a portable library for dense matrix computations, - providing much of the functionality present in LAPACK', markedDefault: false, - versionName: 3.1.0} + - {description: The Gurobi Optimizer is a commercial optimization solver for + mathematical programming., markedDefault: false, versionName: 7.5.1} + - {description: The Gurobi Optimizer is a commercial optimization solver for + mathematical programming., markedDefault: false, versionName: 8.0.1_py27} + - {description: The Gurobi Optimizer is a commercial optimization solver for + mathematical programming., markedDefault: false, versionName: 8.0.1_py36} + - {description: The Gurobi Optimizer is a commercial optimization solver for + mathematical programming., markedDefault: false, versionName: 9.0.3_py36} + - {description: The Gurobi Optimizer is a commercial optimization solver for + mathematical programming., markedDefault: false, versionName: 10.0.1_py39} + - categories: math, computational geometry + defaultVersionName: 7.6.2 + description: Open CASCADE Technology (OCCT) is an open-source full-scale 3D + geometry library + package: opencascade + url: https://dev.opencascade.org/ + versions: + - {description: Open CASCADE Technology (OCCT) is an open-source full-scale + 3D geometry library, markedDefault: false, versionName: 7.6.2} - categories: math, numerical analysis defaultVersionName: 4.2.1 description: GNU Octave is a high-level language primarily intended for numerical @@ -3284,14 +3296,6 @@ software_modules: versions: - {description: GNU Octave is a high-level language primarily intended for numerical computations., markedDefault: false, versionName: 4.2.1} - - categories: math, symbolic - defaultVersionName: 0.12.3_py39 - description: High-Performance Symbolic Regression in Python and Julia. - package: py-pysr - url: https://github.com/MilesCranmer/PySR - versions: - - {description: High-Performance Symbolic Regression in Python and Julia., markedDefault: false, - versionName: 0.12.3_py39} - categories: math, statistics defaultVersionName: 3.5.1 description: R is a free software environment for statistical computing and @@ -3342,21 +3346,6 @@ software_modules: properties: arch: {gpu: 1} versionName: 12.1.0_py39 - - categories: math, numerical library - defaultVersionName: 6.0.4 - description: Software package and libraries for sequential and parallel graph - partitioning, static mapping and clustering, sequential mesh and hypergraph - partitioning, and sequential and parallel sparse matrix block ordering. - package: scotch - url: http://www.labri.fr/perso/pelegrin/scotch - versions: - - description: Software package and libraries for sequential and parallel graph - partitioning, static mapping and clustering, sequential mesh and hypergraph - partitioning, and sequential and parallel sparse matrix block ordering. - markedDefault: false - properties: - parallel: {mpi: 1} - versionName: 6.0.4 - categories: math, numerical library defaultVersionName: 5.1.2 description: A parallel sparse direct solver. @@ -3364,26 +3353,42 @@ software_modules: url: http://mumps.enseeiht.fr/ versions: - {description: A parallel sparse direct solver., markedDefault: false, versionName: 5.1.2} - - categories: math, statistics - defaultVersionName: 2022.02.2-485 - description: RStudio is an integrated development environment (IDE) for R. It - includes a console, syntax-highlighting editor that supports direct code execution, - as well as tools for plotting, history, debugging and workspace management. - This is the X11/GUI version. - package: rstudio-desktop - url: http://www.rstudio.com - versions: - - {description: 'RStudio is an integrated development environment (IDE) for - R. It includes a console, syntax-highlighting editor that supports direct - code execution, as well as tools for plotting, history, debugging and workspace - management. This is the X11/GUI version.', markedDefault: false, versionName: 2022.02.2-485} - categories: math, numerical library - defaultVersionName: 3.18.2_py39 - description: Python bindings for SLEPc. - package: py-slepc4py - url: https://slepc.upv.es/ + defaultVersionName: 1.14.3_py27 + description: NumPy is the fundamental package for scientific computing with + Python. + package: py-numpy + url: http://www.numpy.org versions: - - {description: Python bindings for SLEPc., markedDefault: false, versionName: 3.18.2_py39} + - {description: NumPy is the fundamental package for scientific computing with + Python., markedDefault: false, versionName: 1.14.3_py36} + - {description: NumPy is the fundamental package for scientific computing with + Python., markedDefault: false, versionName: 1.17.2_py36} + - {description: NumPy is the fundamental package for scientific computing with + Python., markedDefault: false, versionName: 1.18.1_py36} + - {description: NumPy is the fundamental package for scientific computing with + Python., markedDefault: false, versionName: 1.19.2_py36} + - {description: NumPy is the fundamental package for scientific computing with + Python., markedDefault: false, versionName: 1.20.3_py39} + - {description: NumPy is the fundamental package for scientific computing with + Python., markedDefault: false, versionName: 1.24.2_py39} + - {description: NumPy is the fundamental package for scientific computing with + Python., markedDefault: true, versionName: 1.14.3_py27} + - categories: math, statistics + defaultVersionName: '9.4' + description: SAS is a software suite developed by SAS Institute for advanced + analytics, multivariate analyses, business intelligence, data management, + and predictive analytics. + package: sas + url: http://www.sas.com/ + versions: + - description: SAS is a software suite developed by SAS Institute for advanced + analytics, multivariate analyses, business intelligence, data management, + and predictive analytics. + markedDefault: false + properties: + license: {restricted: 1} + versionName: '9.4' - categories: math, machine learning defaultVersionName: 0.19.1_py27 description: Scikit-learn is a free software machine learning library for the @@ -3399,6 +3404,16 @@ software_modules: the Python programming language., markedDefault: false, versionName: 1.0.2_py39} - {description: Scikit-learn is a free software machine learning library for the Python programming language., markedDefault: true, versionName: 0.19.1_py27} + - categories: math, optimization + defaultVersionName: 2.10.0_py39 + description: Optuna is an automatic hyperparameter optimization software framework, + particularly designed for machine learning. + package: py-optuna + url: https://optuna.readthedocs.io/ + versions: + - {description: 'Optuna is an automatic hyperparameter optimization software + framework, particularly designed for machine learning.', markedDefault: false, + versionName: 2.10.0_py39} - categories: math, numerical library defaultVersionName: '2019' description: Intel Math Kernel Library (Intel MKL) is a library of optimized @@ -3505,16 +3520,26 @@ software_modules: maths) for the C++ language, aiming towards a good balance between speed and ease of use.', markedDefault: false, versionName: 8.200.1} - categories: math, deep learning - defaultVersionName: 8.5.1.7_py39 - description: Python bindings for the TensorRT library. - package: py-tensorrt - url: https://developer.nvidia.com/tensorrt + defaultVersionName: 0.12.1_py27 + description: Horovod is a distributed training framework for TensorFlow. The + goal of Horovod is to make distributed Deep Learning fast and easy to use. + package: py-horovod + url: https://github.com/uber/horovod versions: - - description: Python bindings for the TensorRT library. + - description: Horovod is a distributed training framework for TensorFlow. The + goal of Horovod is to make distributed Deep Learning fast and easy to use. markedDefault: false properties: arch: {gpu: 1} - versionName: 8.5.1.7_py39 + parallel: {mpi: 1} + versionName: 0.12.1_py36 + - description: Horovod is a distributed training framework for TensorFlow. The + goal of Horovod is to make distributed Deep Learning fast and easy to use. + markedDefault: true + properties: + arch: {gpu: 1} + parallel: {mpi: 1} + versionName: 0.12.1_py27 - categories: math, deep learning defaultVersionName: 0.3.0_py27 description: PyTorch is a deep learning framework that puts Python first. @@ -6196,7 +6221,7 @@ software_modules: machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.', markedDefault: false, versionName: 4.8.1} - categories: devel, language - defaultVersionName: 5.26.0 + defaultVersionName: 5.36.1 description: Perl 5 is a highly capable, feature-rich programming language with over 29 years of development. package: perl @@ -6205,6 +6230,9 @@ software_modules: - {description: 'Perl 5 is a highly capable, feature-rich programming language with over 29 years of development.', help: 'https://www.sherlock.stanford.edu/docs/software/using/perl', markedDefault: false, versionName: 5.26.0} + - {description: 'Perl 5 is a highly capable, feature-rich programming language + with over 29 years of development.', help: 'https://www.sherlock.stanford.edu/docs/software/using/perl', + markedDefault: false, versionName: 5.36.1} - categories: devel, engine defaultVersionName: 8.4.371.22 description: V8 is Google’s open source high-performance JavaScript and WebAssembly diff --git a/src/docs/software/updates.xml b/src/docs/software/updates.xml index 3533b666f..03985a5fc 100644 --- a/src/docs/software/updates.xml +++ b/src/docs/software/updates.xml @@ -5,6 +5,51 @@ Sherlock software update feed https://www.sherlock.stanford.edu/docs/software/list + + New module: math/polymake version 4.10 + polymake is open source software for research in polyhedral geometry. + https://polymake.org + https://www.sherlock.stanford.edu/docs/software/list/?add:v=4.10#polymake + math, computational geometry + kilian@stanford.edu (Kilian Cavalotti) + Wed, 20 Sep 2023 10:59:25 -0700 + + + New module: system/groff version 1.23.0 + groff (GNU roff) is a typesetting system that reads plain text input files that include formatting commands to produce output in PostScript, PDF, HTML, or DVI formats or for display to a terminal. + https://www.gnu.org/software/groff + https://www.sherlock.stanford.edu/docs/software/list/?add:v=1.23.0#groff + system, document processing + kilian@stanford.edu (Kilian Cavalotti) + Wed, 20 Sep 2023 10:58:00 -0700 + + + New module: math/flint version 2.9.0 + FLINT is a C library for doing number theory. + https://flintlib.org/ + https://www.sherlock.stanford.edu/docs/software/list/?add:v=2.9.0#flint + math, numerical library + kilian@stanford.edu (Kilian Cavalotti) + Wed, 20 Sep 2023 10:57:27 -0700 + + + New module: math/bliss version 0.73 + A tool for computing automorphism groups and canonical forms of graphs. + http://www.tcs.hut.fi/Software/bliss/ + https://www.sherlock.stanford.edu/docs/software/list/?add:v=0.73#bliss + math, graph computing + kilian@stanford.edu (Kilian Cavalotti) + Wed, 20 Sep 2023 10:57:21 -0700 + + + New version: devel/perl version 5.36.1 + Perl 5 is a highly capable, feature-rich programming language with over 29 years of development. + https://www.perl.org + https://www.sherlock.stanford.edu/docs/software/list/?add:v=5.36.1#perl + devel, language + kilian@stanford.edu (Kilian Cavalotti) + Wed, 20 Sep 2023 10:57:10 -0700 + New module: devel/zfp version 1.0.0 zfp is an open-source library for compressed floating-point and integer arrays that support high throughput read and write random access.