diff --git a/includes/data/software.yml b/includes/data/software.yml index 46bb2db2b..62ff03788 100644 --- a/includes/data/software.yml +++ b/includes/data/software.yml @@ -645,7 +645,7 @@ software_modules: expression pattern matching using the same syntax and semantics as Perl 5., markedDefault: false, versionName: '8.40'} - categories: system, libs - defaultVersionName: '6.0' + defaultVersionName: '6.4' description: The ncurses (new curses) library is a free software emulation of curses in System V Release 4.0 (SVr4), and more. package: ncurses @@ -654,6 +654,9 @@ software_modules: - {description: 'The ncurses (new curses) library is a free software emulation of curses in System V Release 4.0 (SVr4), and more.', markedDefault: false, versionName: '6.0'} + - {description: 'The ncurses (new curses) library is a free software emulation + of curses in System V Release 4.0 (SVr4), and more.', markedDefault: false, + versionName: '6.4'} - categories: system, libs defaultVersionName: 3.1.5_py39 description: Standard OpenGL bindings for Python. @@ -947,7 +950,7 @@ software_modules: help: 'https://www.sherlock.stanford.edu/docs/software/using/postgresql', markedDefault: false, versionName: '14.5'} - categories: system, database - defaultVersionName: 3.37.2 + defaultVersionName: 3.44.2 description: SQLite is a self-contained, high-reliability, embedded, full-featured, public-domain, SQL database engine. package: sqlite @@ -957,6 +960,8 @@ software_modules: public-domain, SQL database engine.', markedDefault: false, versionName: 3.18.0} - {description: 'SQLite is a self-contained, high-reliability, embedded, full-featured, public-domain, SQL database engine.', markedDefault: false, versionName: 3.37.2} + - {description: 'SQLite is a self-contained, high-reliability, embedded, full-featured, + public-domain, SQL database engine.', markedDefault: false, versionName: 3.44.2} - categories: system, libs defaultVersionName: '59.1' description: ICU is a set of C/C++ and Java libraries providing Unicode and @@ -2411,6 +2416,8 @@ software_modules: Python., markedDefault: false, versionName: 1.20.3_py39} - {description: NumPy is the fundamental package for scientific computing with Python., markedDefault: false, versionName: 1.24.2_py39} + - {description: NumPy is the fundamental package for scientific computing with + Python., markedDefault: false, versionName: 1.26.3_py312} - {description: NumPy is the fundamental package for scientific computing with Python., markedDefault: true, versionName: 1.14.3_py27} - categories: math, deep learning @@ -2766,6 +2773,8 @@ software_modules: versionName: 0.3.9} - {description: OpenBLAS is an optimized BLAS library, family: blas, markedDefault: false, versionName: 0.3.20} + - {description: OpenBLAS is an optimized BLAS library, family: blas, markedDefault: false, + versionName: 0.3.26} - {description: OpenBLAS is an optimized BLAS library, family: blas, markedDefault: true, versionName: 0.3.10} - categories: math, numerical library diff --git a/src/docs/software/updates.xml b/src/docs/software/updates.xml index 4503a4bea..afbac6e8f 100644 --- a/src/docs/software/updates.xml +++ b/src/docs/software/updates.xml @@ -5,6 +5,51 @@ Sherlock software update feed https://www.sherlock.stanford.edu/docs/software/list + + New version: math/py-numpy version 1.26.3_py312 + NumPy is the fundamental package for scientific computing with Python. + http://www.numpy.org + https://www.sherlock.stanford.edu/docs/software/list/?add:v=1.26.3_py312#py-numpy + math, numerical library + kilian@stanford.edu (Kilian Cavalotti) + Fri, 12 Jan 2024 18:23:23 -0800 + + + New version: math/openblas version 0.3.26 + OpenBLAS is an optimized BLAS library + http://www.openblas.net/ + https://www.sherlock.stanford.edu/docs/software/list/?add:v=0.3.26#openblas + math, numerical library + kilian@stanford.edu (Kilian Cavalotti) + Fri, 12 Jan 2024 18:19:06 -0800 + + + New version: devel/python version 3.12.1 + Python is an interpreted, interactive, object-oriented programming language. + https://www.python.org + https://www.sherlock.stanford.edu/docs/software/list/?add:v=3.12.1#python + devel, language + kilian@stanford.edu (Kilian Cavalotti) + Fri, 12 Jan 2024 17:11:46 -0800 + + + New version: system/sqlite version 3.44.2 + SQLite is a self-contained, high-reliability, embedded, full-featured, public-domain, SQL database engine. + https://www.sqlite.org + https://www.sherlock.stanford.edu/docs/software/list/?add:v=3.44.2#sqlite + system, database + kilian@stanford.edu (Kilian Cavalotti) + Fri, 12 Jan 2024 16:35:14 -0800 + + + New version: system/ncurses version 6.4 + The ncurses (new curses) library is a free software emulation of curses in System V Release 4.0 (SVr4), and more. + https://www.gnu.org/software/ncurses + https://www.sherlock.stanford.edu/docs/software/list/?add:v=6.4#ncurses + system, libs + kilian@stanford.edu (Kilian Cavalotti) + Fri, 12 Jan 2024 16:14:15 -0800 + New version: biology/mixcr version 4.6.0 MiXCR is a universal framework that processes big immunome data from raw sequences to quantitated clonotypes.