From b0977943be441368466c344627a8b33bba1cfd96 Mon Sep 17 00:00:00 2001
From: Kilian Cavalotti <kilian@stanford.edu>
Date: Thu, 26 Oct 2023 12:10:37 -0700
Subject: [PATCH] docs: updated software list

---
 includes/data/software.yml    | 11 ++++++++++-
 src/docs/software/updates.xml | 18 ++++++++++++++++++
 2 files changed, 28 insertions(+), 1 deletion(-)

diff --git a/includes/data/software.yml b/includes/data/software.yml
index 575cc80ef..e1d41e1b0 100644
--- a/includes/data/software.yml
+++ b/includes/data/software.yml
@@ -3415,6 +3415,8 @@ software_modules:
           the Python programming language., markedDefault: false, versionName: 0.24.2_py36}
       - {description: Scikit-learn is a free software machine learning library for
           the Python programming language., markedDefault: false, versionName: 1.0.2_py39}
+      - {description: Scikit-learn is a free software machine learning library for
+          the Python programming language., markedDefault: false, versionName: 1.3.2_py39}
       - {description: Scikit-learn is a free software machine learning library for
           the Python programming language., markedDefault: true, versionName: 0.19.1_py27}
     - categories: math, optimization
@@ -4930,7 +4932,7 @@ software_modules:
           arch: {gpu: 1}
         versionName: 1.3.1
     - categories: biology, cryo-em
-      defaultVersionName: 0.2.4_py36
+      defaultVersionName: 0.2.5_py39
       description: A pipeline for particle detection in cryo-electron microscopy images
         using convolutional neural networks trained from positive and unlabeled examples.
       package: py-topaz
@@ -4943,6 +4945,13 @@ software_modules:
         properties:
           arch: {gpu: 1}
         versionName: 0.2.4_py36
+      - description: A pipeline for particle detection in cryo-electron microscopy
+          images using convolutional neural networks trained from positive and unlabeled
+          examples.
+        markedDefault: false
+        properties:
+          arch: {gpu: 1}
+        versionName: 0.2.5_py39
     - categories: biology, genomics
       defaultVersionName: 3.0.2_py27
       description: Assessing genome assembly and annotation completeness with Benchmarking
diff --git a/src/docs/software/updates.xml b/src/docs/software/updates.xml
index 70e84ecd2..291c57133 100644
--- a/src/docs/software/updates.xml
+++ b/src/docs/software/updates.xml
@@ -5,6 +5,24 @@
 <description>Sherlock software update feed</description>
 <link>https://www.sherlock.stanford.edu/docs/software/list</link>
 <atom:link href="https://www.sherlock.stanford.edu/docs/software/updates.xml" rel="self" type="application/rss+xml"/>
+    <item>
+        <title>New version: math/py-scikit-learn version 1.3.2_py39</title>
+        <description>Scikit-learn is a free software machine learning library for the Python programming language.</description>
+        <link>http://scikit-learn.org</link>
+        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=1.3.2_py39#py-scikit-learn</guid>
+        <category>math, machine learning</category>
+        <author>kilian@stanford.edu (Kilian Cavalotti)</author>
+        <pubDate>Thu, 26 Oct 2023 12:10:01 -0700</pubDate>
+    </item>
+    <item>
+        <title>New version: biology/py-topaz version 0.2.5_py39</title>
+        <description>A pipeline for particle detection in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples.</description>
+        <link>https://github.com/tbepler/topaz</link>
+        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=0.2.5_py39#py-topaz</guid>
+        <category>biology, cryo-em</category>
+        <author>kilian@stanford.edu (Kilian Cavalotti)</author>
+        <pubDate>Thu, 26 Oct 2023 12:09:44 -0700</pubDate>
+    </item>
     <item>
         <title>New version: biology/motioncor2 version 1.6.4</title>
         <description>MotionCor2 is a multi-GPU accelerated program which corrects anisotropic image motion at the single pixel level.</description>