R-CMD-check.yaml

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
  push:
    branches:
      - master
  pull_request:
    branches:
      - master

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: macOS-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      _R_CHECK_FORCE_SUGGESTS_: false
    steps: 
      - uses: actions/checkout@v3
      - uses: r-lib/actions/setup-r@v2
      - name: Install GSL
        run: brew install gsl
      - name: Install dependencies
        run: |
          install.packages(c("remotes","rcmdcheck","mvtnorm","matrixStats"))
          install.packages(c("devtools","remotes","RcppGSL","R6","abind"))
          install.packages(c("progress","ggplot2","cowplot","ggrepel"))
          remotes::install_github("stephenslab/susieR",upgrade="never",force=TRUE)
          remotes::install_github("stephens999/ashr",upgrade="never",force=TRUE)
          remotes::install_github("stephenslab/mashr",upgrade="never",force=TRUE)
        shell: Rscript {0}
      - name: Check
        run: |
          options(crayon.enabled = TRUE)
          rcmdcheck::rcmdcheck(args = c("--no-manual","--ignore-vignettes"),
                               error_on = "error",build_args = "--no-build-vignettes")
        shell: Rscript {0}