set_up.tex

\usepackage[utf8]{inputenc}
\usepackage{amsmath}
\usepackage{amsthm}

% to comment out code
\usepackage{comment}

% Add transparency to the slides 
\setbeamercovered{transparent}

%% Colors
%% ------

\definecolor{sg_blue}{RGB}{0, 149, 212}
\definecolor{sg_darkblue}{RGB}{23, 66, 140}
\definecolor{sg_green}{RGB}{79, 176, 181}
\definecolor{sg_orange}{RGB}{237, 102, 8}
\definecolor{sg_red}{RGB}{227, 0, 59}

\definecolor{my_purple}{RGB}{158, 93, 182}
\definecolor{my_nightblue}{RGB}{0, 55, 123}
\definecolor{my_blue}{RGB}{80, 130, 220}
\definecolor{my_duck}{RGB}{0, 125, 172}
\definecolor{my_turquoise}{RGB}{0, 140, 125}
\definecolor{my_forest}{RGB}{20, 150, 50}
\definecolor{my_apple}{RGB}{90, 180, 50}
\definecolor{my_yellow}{RGB}{249, 190, 36}
\definecolor{my_orange}{RGB}{255, 120, 15}
\definecolor{my_red}{RGB}{250, 50, 10}
\definecolor{my_raspberry}{RGB}{248, 15, 80}
\definecolor{my_brown}{RGB}{150, 95, 50}

\definecolor{my_lightgray}{RGB}{160, 160, 160} % before 200 200 200
\definecolor{my_black}{RGB}{10, 10, 10}
\definecolor{my_gray}{RGB}{100, 100, 100}
\definecolor{my_darkgray}{RGB}{50, 50, 50}
\definecolor{my_white_back}{RGB}{247, 247, 247}
\definecolor{my_white_edge}{RGB}{253, 253, 253}

% Colors meaning
% --------------

\definecolor{water}{named}{my_blue}
\colorlet{ethanol}{my_blue!50!my_raspberry}
\colorlet{propylene}{my_blue!50!my_forest}
\definecolor{dowfax}{named}{my_raspberry}
\definecolor{sds}{named}{my_nightblue}
%\definecolor{my_main}{named}{my_lightgray}
\definecolor{my_main}{named}{my_nightblue}
%\definecolor{my_main}{named}{sg_blue}
\colorlet{mixture}{water!50!propylene}

%% Beamer modifications
%% --------------------

% Use of the colors by beamer
% ---------------------------

\setbeamercolor{normal text}{fg=my_darkgray}
% To have a different back color for the picture
%\setbeamercolor{normal text}{fg=my_darkgray, bg=my_white_back}
\setbeamercolor{frametitle}{fg=my_nightblue}
\setbeamercolor{item}{fg=my_nightblue}
\setbeamercolor{framesubtitle}{fg=my_darkgray}
\setbeamercolor{pagenumber}{fg=my_darkgray}

% \setbeamercolor{normal text}{fg=my_darkgray, bg=my_white_back}
% \setbeamercolor{frametitle}{fg=my_darkgray}
% \setbeamercolor{item}{fg=my_darkgray}
% \setbeamercolor{framesubtitle}{fg=my_darkgray}
% \setbeamercolor{pagenumber}{fg=my_darkgray}


\setbeamercolor{alerted text}{fg=my_main}
\setbeamercolor{example text}{fg=my_raspberry}
\setbeamercolor{structure}{fg=my_main}
\setbeamercolor{background canvas}{parent=normal text}
%\setbeamercolor{background canvas}{parent=white}
\setbeamercolor{background}{parent=white}
%\setbeamercolor{background}{parent=background canvas}

\usefonttheme{default}
% font themes: default, professionalfonts, serif,
% structurebold, structureitalicserif, structuresmallcapsserif

% Add frame number in the navigation symbol
% -------------------
\setbeamertemplate{navigation symbols}{}
%\addtobeamertemplate{navigation symbols}{}{%
%	\usebeamerfont{footline}%
%	\usebeamercolor[fg]{footline}%
%	\hspace{1em}%
%	\insertframenumber/\inserttotalframenumber
%}

% New colors / from Franck
% ----------

%\newcommand{\greyemph}[1]{\textcolor{gray}{#1}}
%\newcommand{\dgreyemph}[1]{\textcolor{darkgray}{#1}}
%\newcommand{\citeemph}[1]{{\footnotesize \dgreyemph{[#1]}}}
%\newcommand{\defemph}[1]{{\usebeamercolor[fg]{frametitle} #1}}
%\newcommand{\remph}[1]{{\usebeamercolor[fg]{alerted text} #1}}

% Numbering and items
% -------------------

%\setbeamertemplate{footline}[frame number]
%\setbeamertemplate{itemize item}[circle]
%\setbeamertemplate{itemize subitem}[circle]




\usepackage[parfill]{parskip}
\usepackage[section]{placeins}
\usepackage{graphicx}




%To scale the footnote size properly
\usepackage{mathptmx}
\usepackage{anyfontsize}
\usepackage{t1enc}

%% Math imports
\usepackage{mathtools}
\usepackage{amsmath}
\usepackage{amsfonts}
\usepackage{amssymb}
\usepackage{soul}

\usepackage{setspace}
\usepackage{color}
\usepackage{listings}

%Add latex_code to the document


% Cite several sources
\usepackage{cite}


%\usepackage[marginparwidth=3cm]{geometry}
%\usepackage{marginnote}
\DeclareMathAlphabet{\mymathbb}{U}{bbold}{m}{n}

%To set the usetheme and the colors
%\usetheme{Madrid}
%\usetheme{default}

%Set the colors
%\usecolortheme{rose}
% color themes: albatross, beaver, beetle, crane, default, dolphin, dov, fly, lily, orchid, rose, seagull, seahorse, sidebartab, structure, whale, wolverine

%Set the text style
%\usefonttheme{serif}
% font themes: default, professionalfonts, serif, structurebold, structureitalicserif, structuresmallcapsserif

%If you want to change the text colors again
% \setbeamercolor{normal text}{fg=black,bg=white}
% \setbeamercolor{pagenumber}{fg=pagenumbercolor}
% \setbeamercolor{alerted text}{fg=red}
% \setbeamercolor{example text}{fg=blue!50!white}
% \setbeamercolor{structure}{fg=blue!70!white}
% \setbeamercolor{background canvas}{parent=normal text}
% \setbeamercolor{background}{parent=background canvas}
% \setbeamercolor{framesource}{fg=black}
% \setbeamerfont{framesource}{size=\small}

%\input{math_setup.tex}

%Add pagenumering
% \beamertemplatenavigationsymbolsempty
% \addtobeamertemplate{navigation symbols}{}{ \hspace{1em}    \usebeamerfont{footline}%
%   \insertframenumber / \inserttotalframenumber }

%% Bibliography
%\usepackage[backend=biber,style=ieee]{biblatex}
%\bibliography{manual}

% % To show references on the same slide:
% \usepackage[backend=bibtex]{biblatex}

% \makeatletter
% \def\blx@maxline{77}
% \makeatother

% % Resset footnote to be showed on each slide
%  \let\oldfootnote\footnote
% \renewcommand\footnote[1][]{\oldfootnote[frame,#1]}
% \makeatother

% % Use square-parenthesis as mark
% \makeatletter
% \renewcommand\@makefnmark{\hbox{\usebeamercolor[fg]{footnote mark}\usebeamerfont*{footnote mark}[\@thefnmark]}}
% \renewcommand\@makefntext[1]{\fontsize{4}{5}\selectfont {\usebeamercolor[fg]{footnote
%       mark}\usebeamerfont*{footnote
%       mark}[\@thefnmark]}\enspace\usebeamerfont*{footnote} #1}
% \makeatother



% To show references on the same slide:
\usepackage[backend=bibtex]{biblatex}

\makeatletter
\def\blx@maxline{77}
\makeatother

% Resset footnote to be showed on each slide
 \let\oldfootnote\footnote
\renewcommand\footnote[1][]{\oldfootnote[frame,#1]}
\makeatother

% Use square-parenthesis as mark
\makeatletter
\renewcommand\@makefnmark{\hbox{\usebeamercolor[fg]{footnote mark}\usebeamerfont*{footnote mark}[\@thefnmark]}}
\renewcommand\@makefntext[1]{\fontsize{4}{5}\selectfont {\usebeamercolor[fg]{footnote
      mark}\usebeamerfont*{footnote
      mark}[\@thefnmark]}\enspace\usebeamerfont*{footnote} #1}
\makeatother



% \let\svthefootnote\thefootnote
% \textheight 1in
% \newcommand\blankfootnote[1]{%
%   \let\thefootnote\relax\footnotetext{#1}%
%   \let\thefootnote\svthefootnote%
% }





% % Use square-parenthesis as mark
% \makeatletter
% \renewcommand\@makefnmark{\hbox{\@textsuperscript{\usebeamercolor[fg]{footnote mark}\usebeamerfont*{footnote mark}[\@thefnmark]}}}
% \renewcommand\@makefntext[1]{\@textsuperscript{\usebeamercolor[fg]{footnote
%       mark}\usebeamerfont*{footnote
%       mark}[\@thefnmark]}\enspace\usebeamerfont*{footnote} #1}
% \makeatother



% --- Add predefined colors
\usepackage{xcolor}
%\usepackage{listings}
\lstset
{
    language=[LaTeX]TeX,
    breaklines=true,
    basicstyle=\tt\scriptsize,
    keywordstyle=\color{my_black},
    identifierstyle=\color{my_nightblue},
    basicstyle=\footnotesize %\tiny, %or \small or \footnotesize etc.
}

%Add tikz functionlaity to the document
% \usepackage{tikz}
% \usepackage{showexpl}
% \lstset{
%     language=[LaTeX]TeX,
%     breaklines=true,
%     basicstyle=\tt\scriptsize,
%     keywordstyle=\color{blue},
%     identifierstyle=\color{magenta},
% }

%Set nice figures
\usepackage{graphicx}
%\usepackage{subcaption}

\usepackage{calc} % Allow use of mathematical expressions to set lenght units etc.
\usepackage{url} % Break long urls over several lines


\usepackage{pgfplots}
\pgfplotsset{compat=newest}

%% Tikz
\usepackage{tikz,overpic}
\usetikzlibrary{fit,shapes.misc}
\usetikzlibrary{plotmarks}


%set the arrow style
\tikzset{>=latex}
\usetikzlibrary{arrows.meta,positioning,decorations.markings,backgrounds}
%\usetikzlibrary{arrows.meta}
\usepgfplotslibrary{patchplots}
\usepackage{grffile}
\pgfplotsset{plot coordinates/math parser=false}
\setbeamercovered{dynamic}

% Figure width parameter
\newlength\fwidth
\newlength\fheight

% Allow tables
\usepackage{multirow}



%% Packages
%% --------

\usepackage[utf8]{inputenc}
\usepackage[english]{babel}
\usepackage{multicol}
\usepackage{setspace}

\usepackage{amsmath,amssymb,amsfonts}
\usepackage{mathrsfs}
\usepackage{anyfontsize}

%\usepackage{eurosym}
\usepackage[autolanguage]{numprint}
\usepackage{SIunits}
%\usepackage[squaren,Gray]{SIunits}
\usepackage{textcomp}

\usepackage{graphicx} % trim = {left, lower, right, upper}
%\usepackage{wrapfig}
% \usepackage{caption}
% \usepackage{subcaption}
% \usepackage{subfigure} is an old package
% \usepackage{subcaption} is not compatible with all beamer version
%\usepackage{subfig} % is supposed to be the best, but its use is different

\usepackage[skip=0.01pt]{caption} % example skip set to 2pt
%\usepackage{caption}
\captionsetup{labelformat=empty,labelsep=none}
\usepackage[skip=0.01pt]{subcaption}
\usepackage{capt-of}
\captionsetup[subfigure]{labelformat = parens, labelsep = space, labelfont=bf}
\captionsetup[sub]{labelsep=newline}
\setbeamertemplate{caption}[numbered]
     %Change the subcaptions to capital letters
%\renewcommand{\thesubfigure}{\Alph{subfigure}}
%\usepackage{graphicx,subcaption}
\newcommand\newsubcap[1]{\phantomcaption%
       \caption*{\figurename~\thefigure(\thesubfigure): #1}}

\setbeamercovered{dynamic}

\captionsetup[subfigure]{labelformat=empty}




%\usepackage[colorlinks]{hyperref}
\usepackage{hyperref}
\usepackage{animate}[2017/05/18]
%\setbeamercovered{dynamic} % not yet displayed objects are transparent: does not work with images.
\usepackage{xparse} %if in function
%\usepackage{psnfss}
\usepackage[export]{adjustbox}

\usepackage{appendixnumberbeamer}

\usepackage{xpatch} % Increase vertical spacing between items
\xpatchcmd{\itemize}
  {\def\makelabel}
  {\setlength{\itemsep}{5ex}\def\makelabel}
  {}
  {}

% Franck packages
% ----------------

%\usepackage{ae, aeguill}
%\usepackage{stmaryrd}
%\usepackage{times} % times font (larger than standard)
%\usepackage{color}
%\usepackage{enumerate}
%\setlist{nosep} % or \setlist{noitemsep} to leave space around whole list
%\usepackage[all]{xy}    % for commutative diagrams
%\usepackage{pgf, pgfarrows, pgfautomata, pgfheaps, pgfnodes, pgfshade}
%\usepackage{multimedia}   % for embedding movies
%\usepackage{symbmath}
%\usepackage{ifthen}
%\usepackage[FIGTOPCAP]{subfigure}
%\usepackage{pifont}



% Introduction des logos
% ----------------------

\logo{
%	\begin{columns}
%		\hspace{-32pt}
%		\column[b]{0.65\paperwidth}
		%\scalebox{0.8}{\textcolor{my_lightgray}{SVI - CONFIDENTIAL Disclosure or reproduction without prior written permission of Saint-Gobain Research Paris is prohibited}}
%		\column[b]{0.035\paperwidth}
		%\putscale(3){logos/Logos}{0.13}
	%	\vspace{-3pt}
%		\column[b]{0.11\paperwidth}
		%\includegraphics[page=5]{logos/Logos}
	%	\vspace{-8pt}
%		\column[b]{0.1\paperwidth}
		{\scriptsize \hyperlink{tableofcontent}{\textcolor{my_darkgray}{\insertframenumber/\inserttotalframenumber}}}
%	\end{columns}
	\vspace{-5pt}
}

% Background
% ----------

%\setbeamertemplate{background}% {
% \ifthenelse{\value{page}=1}{
% \includegraphics[page=7]{logos/Logos}
% }
% %  \includegraphics{}
% % }
% %else
% %	{}%\hspace{0.5cm}\includegraphics[width=0.06\paperwidth, page=6]{logos/Logos}}
% }

% %\setbeamertemplate{frametitle}{
% %	\vspace{0.2cm}\hspace{0.45cm} \insertframetitle
% %}

% \setbeamertemplate{frametitle}{
%  % \vspace{0.2cm}
%   \insertframetitle
% }

%% New commands
%% ------------

\DeclareMathOperator{\grad}{\nabla}
\DeclareMathOperator{\dive}{\nabla\cdot}
\DeclareMathOperator{\rot}{rot}
\DeclareMathOperator{\laplacien}{\Delta}

%\newcommand{\paragraphtitle}[1]{{\large #1 \smallskip}}
\newcommand{\paragraphtitle}[1]{{\hspace{-0.35cm} \large #1 \smallskip}}
\newcommand{\semitransp}[2][35]{{\color{fg!#1}#2}}
\newcommand{\setframetitle}{\hspace{-0.35cm}\semitransp[50]{\insertsectionhead{}\newline $\blacktriangleright{}$}\insertsubsectionhead{}\vspace{0.2cm}}

\newcommand{\dev}{\text{d}}
\newcommand{\deriv}[2]{\frac{\dev #1}{\dev #2}}
\newcommand{\depar}[2]{\frac{\partial #1}{\partial #2}}
\newcommand{\delag}[2]{\frac{\mathcal{D} #1}{\mathcal{D} #2}}
\renewcommand{\vec}[1]{\mathbf{#1}}
\newcommand{\mat}[1]{\underline{\underline{#1}}}

\newcommand{\ind}[1]{_\text{#1}}
\newcommand{\expo}[1]{^\text{#1}}
\renewcommand{\thefootnote}{\arabic{footnote}}
\newcommand{\val}[2]{\numprint{#1}~\text{#2}}

\newcommand{\para}{\medbreak\par}
\renewcommand{\epsilon}{\varepsilon}
\renewcommand{\phi}{\varphi}
\newcommand{\up}{\textsuperscript}

\newcommand{\aaj}[1]{\textcolor{red}{[#1]}}
\newcommand{\mycite}[1]{
	{\footnotesize \par \textcolor{my_main}{#1} \par}
	\vspace{-2pt}}

\DeclareDocumentCommand \putput { d[] d[] d() m m } {%
	\IfNoValueTF{#3}{%
		\includegraphics[width=#5\textwidth]{#4}%
	}{%
		\includegraphics[page=#3, width=#5\textwidth]{#4}%
	}%
	\IfNoValueTF{#1}{}{\caption{#1}}
	\IfNoValueTF{#2}{}{\label{#2}}
}

\DeclareDocumentCommand \putscale { d<> d<> d() m m } {%
	\IfNoValueTF{#3}{%
		\includegraphics[scale=#5]{#4}%
	}{%
		\includegraphics[page=#3, scale=#5]{#4}%
	}%
	\IfNoValueTF{#1}{}{\caption{#1}}
	\IfNoValueTF{#2}{}{\label{#2}}
}

\DeclareDocumentCommand \video { d[] d[] m m m m m } {%
	% graphics option, video options, speed, start, end, best, name
	\ifthenelse{\final=1}{% video
		\animategraphics[#1, #2]{#3}{#7}{#4}{#5}%
	}{%image
		\includegraphics[#1, clip]{#7#6}%
	}%
}%

\newcommand{\cfbox}[1]{%
	\colorlet{currentcolor}{.}%
	{\color{my_gray}%
		\fbox{#1}}%
}%

\DeclareDocumentCommand \videobox { d[] d[] m m m m m } {%
	% graphics option, video options, speed, start, end, best, name
	\ifthenelse{\final=1}{% video
		\cfbox{\animategraphics[#1, #2]{#3}{#7}{#4}{#5}}%
	}{%image
		\cfbox{\includegraphics[#1, clip]{#7#6}}%
	}%
}%

\newcommand{\ar}{$\blacktriangleright$}

\newcommand{\liquid}[1]{\textcolor{mixture}{#1_{\mathcal{L}}}}
\newcommand{\evapliquid}[1]{\textcolor{water}{#1_{\mathcal{L}_1}}}
\newcommand{\notevapliquid}[1]{\textcolor{propylene}{#1_{\mathcal{L}_2}}}
\newcommand{\vapor}[1]{\textcolor{my_purple}{#1_{\mathcal{V}}}}

\newcommand{\setnormalfigurespace}{
	\setlength{\topsep}{5pt}
	\setlength{\abovecaptionskip}{5pt}
	\setlength{\belowcaptionskip}{0pt}
}

\setnormalfigurespace{}
\setlength{\parindent}{0cm}

\setlength{\fboxsep}{0.1pt}%
\setlength{\fboxrule}{0.2pt}%


%\usepackage{enumitem}
%\setlist[itemize]{leftmargin=*}





%Use tikz to scale credit label
%\usepackage{tikz}
\usetikzlibrary{mindmap,trees,shadows}
\usetikzlibrary{calc}
\tikzset{credit/.style={
    append after command={
      let \p1=($(\tikzlastnode.north east)-(\tikzlastnode.north west)$) in
      node[anchor=north east,align=right,text width=\x1,font=\footnotesize,
        node contents={\scalebox{0.45}{Credit:~\textit{#1}}}, at = (\tikzlastnode.south east)]

    }
  }
}
\def\myimage#1#2#3{\tikz\node[inner sep=0,credit={#3}]{\includegraphics[#1]{#2}};}

\tikzset{creditShift/.style={
    append after command={
      let \p1=($(\tikzlastnode.north east)-(\tikzlastnode.north west)$) in
      node[anchor=north east,align=right,text width=\x1,font=\footnotesize,
        node contents={\scalebox{0.45}{\hspace{-3cm}Credit:~\textit{#1}}}, at = (\tikzlastnode.south east)]

    }
  }
}
\def\myimageShift#1#2#3{\tikz\node[inner sep=0,creditShift={#3}]{\includegraphics[#1]{#2}};}




% To make a colored box around the text:
\usepackage[framemethod=TikZ]{mdframed}
\usepackage{lipsum}
\mdfdefinestyle{MyFrame}{%
    linecolor=my_raspberry,
    outerlinewidth=2pt,
    roundcorner=1pt,
    innertopmargin=\baselineskip,
    innerbottommargin=\baselineskip,
    innerrightmargin=2pt,
    innerleftmargin=2pt,
    backgroundcolor=white}


%Set footnote without marker for the last slide:
%To reset the footnote counter in the last slide
%\usepackage{perpage}
\usepackage{appendixnumberbeamer}


% appendixframe includes a hyperlink to the frame labeled ‘questions’.
% The ‘\vskip’ commands are only included so that this button always
% appears on the bottom of the frame.
\newenvironment{appendixframe}[1]
  {\begin{frame}[environment=appendixframe]\frametitle{#1}}
  {\vskip0ptplus1filll%
    \hyperlink{questions}{\beamerreturnbutton{Return}}%
    \vskip2ex\end{frame}}



%Add text in bottom of slide:

\newcommand{\btVFill}{\vskip0pt plus 1filll}


%Italic font style
\newcommand*\latin[1]{\textit{#1}}


% Usepackage to cancel mathematical expressions
\usepackage{cancel}

%To color cancel in red:
\newcommand\Ccancel[2][red]{\renewcommand\CancelColor{\color{#1}}\xcancel{#2}}



% --- Bold math symbol
\usepackage{bm}


% --- Box around figure 
\usepackage{blindtext}