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The current approach is that source.h5m is the hardcoded file that is looked for.
The most practical way to stay within source.F90 is to add a (partial) parser for the r2s.cfg files. This would also be the solution for optional parameters, a la #45. This is probably a task for post-thesis/summer work, though.
I had been approaching this with the goal of keeping the portability of (and ability to quickly swap out) source.F90 files in mind. I will look into it at some point, though.
Need inspiration for the best way to do this in Fortran+MCNP.
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