diff --git a/jcvi/apps/ks.py b/jcvi/compara/ks.py
similarity index 100%
rename from jcvi/apps/ks.py
rename to jcvi/compara/ks.py
diff --git a/jcvi/apps/pedigree.py b/jcvi/compara/pedigree.py
similarity index 100%
rename from jcvi/apps/pedigree.py
rename to jcvi/compara/pedigree.py