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I have written a script to automate the process after generating the blocks file by running:
python -m jcvi.compara.synteny mcscan.
This script simplifies the workflow by creating both the blocks file and the blocks.layout file required to execute:
python -m jcvi.graphics.synteny.
I believe this script is useful for checking data. However, since I want to preserve the choise for users to freely create graphics using JCVI, I’m unsure whether I should make a pull request.
If you think it’s useful, please feel free to leave this issue open—it might help others.
The text was updated successfully, but these errors were encountered:
Thank you for developing user-friendly software.
I have written a script to automate the process after generating the blocks file by running:
python -m jcvi.compara.synteny mcscan.
This script simplifies the workflow by creating both the blocks file and the blocks.layout file required to execute:
python -m jcvi.graphics.synteny.
You can find the script here: https://github.com/seikot345/sort-blocks
I believe this script is useful for checking data. However, since I want to preserve the choise for users to freely create graphics using JCVI, I’m unsure whether I should make a pull request.
If you think it’s useful, please feel free to leave this issue open—it might help others.
The text was updated successfully, but these errors were encountered: