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blocks and blocks.layout file #718

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seikot345 opened this issue Nov 26, 2024 · 1 comment
Open

blocks and blocks.layout file #718

seikot345 opened this issue Nov 26, 2024 · 1 comment

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@seikot345
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Thank you for developing user-friendly software.

I have written a script to automate the process after generating the blocks file by running:
 python -m jcvi.compara.synteny mcscan.
This script simplifies the workflow by creating both the blocks file and the blocks.layout file required to execute:
 python -m jcvi.graphics.synteny.

You can find the script here: https://github.com/seikot345/sort-blocks

I believe this script is useful for checking data. However, since I want to preserve the choise for users to freely create graphics using JCVI, I’m unsure whether I should make a pull request.

If you think it’s useful, please feel free to leave this issue open—it might help others.

@tanghaibao
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@seikot345

Nice! I'll leave this issue open for now.

If/when you feel like a pull request, we should be able to pull it in.

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