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Support custom alignment blocks in Microsynteny plots #724

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Adamtaranto opened this issue Nov 26, 2024 · 0 comments
Open
2 tasks

Support custom alignment blocks in Microsynteny plots #724

Adamtaranto opened this issue Nov 26, 2024 · 0 comments
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@Adamtaranto
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Implement jcvi.graphics.ribbon module as a fork of synteny that supports plotting of arbitrary links between chromosomes.

The synteny module currently draws links between genes that are defined as orthologues. Several users have asked for a feature that essentially plots pairwise chromosome alignments (i.e. from BLAT, LASTZ, Minimap2 etc) instead of just linking syntenic genes.

  • Add ribbon module
  • Add tool to run LASTZ and format output for ribbon
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