From 46edc20b9d91ac2d9c3602f1fd908f22d368fdb9 Mon Sep 17 00:00:00 2001 From: Haibao Tang Date: Tue, 18 Jun 2024 08:48:00 -0700 Subject: [PATCH 1/2] np.int_t --- jcvi/assembly/chic.pyx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/jcvi/assembly/chic.pyx b/jcvi/assembly/chic.pyx index 5439b617..cd526243 100644 --- a/jcvi/assembly/chic.pyx +++ b/jcvi/assembly/chic.pyx @@ -22,7 +22,7 @@ from cpython cimport array import array -ctypedef np.int_t INT +ctypedef np.int INT DEF LIMIT = 10000000 DEF BB = 12 cdef int *GR = \ From ce1e42ef7c9037c160aa436bb431e0239224c951 Mon Sep 17 00:00:00 2001 From: Haibao Tang Date: Tue, 18 Jun 2024 08:55:34 -0700 Subject: [PATCH 2/2] numpy<2 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index a37e99db..547730ae 100644 --- a/setup.cfg +++ b/setup.cfg @@ -49,7 +49,7 @@ install_requires = more-itertools natsort networkx - numpy + numpy<2 ortools pybedtools pyefd