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[BUG] App args with mode==INCLUDE_ON_DEMAND and include==false still get submitted via job launcher #358

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nathandf opened this issue Apr 18, 2024 · 0 comments

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@nathandf
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"I am a tapis user from University of Hawaii and a part of Sean Cleveland's team.
I have a tapis-ui question and was told that you are the authority on all things tapis-ui.
I am not sure what the expected behavior is for setting inputMode to INCLUDE_ON_DEMAND in an application definition.
When I submit the job via a jupyter notebook, the argument is not passed to tapisjob_app.sh. But when I submit a job through the UI job launcher, the argument gets passed even when the argument include value is false"

"appArgs": [ {"name": "--n_bases", "arg": "--n_bases 100000", "description": "Number of bases to build the error model", "inputMode": "REQUIRED"}, {"name": "--matching", "arg": "--matching auto", "description": "Order to match index with barcodes. Choices: direct, reversed, auto", "inputMode": "REQUIRED"}, {"name": "--reverseComplement", "arg": "--reverseComplement", "description": "Reverse complement I2 (or I1 if reads are single-barcoded)", "inputMode": "INCLUDE_ON_DEMAND"}, {"name": "--singleBarcoded", "arg": "--singleBarcoded", "description": "Single barcoded reads", "inputMode": "INCLUDE_ON_DEMAND"} ]

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