From cccd4007d0c947f8669d76d1e0153496355a2299 Mon Sep 17 00:00:00 2001 From: Ivan Ogasawara Date: Mon, 6 May 2024 15:24:21 -0400 Subject: [PATCH] chore(deps): Fix dependencies (#217) --- conda/dev.yaml | 3 +- poetry.lock | 4034 +++++++++++++++++++++++++----------------------- pyproject.toml | 14 +- 3 files changed, 2089 insertions(+), 1962 deletions(-) diff --git a/conda/dev.yaml b/conda/dev.yaml index 4be438b..37e2b08 100644 --- a/conda/dev.yaml +++ b/conda/dev.yaml @@ -3,11 +3,10 @@ channels: - conda-forge - nodefaults dependencies: - - docker-compose - libblas - nodejs - pip - - poetry >= 1.3.2 + - poetry >= 1.5,<1.8 - psycopg2 - python 3.9.* - shellcheck diff --git a/poetry.lock b/poetry.lock index 32019b6..334056c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,14 +1,14 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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"zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"}, - {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"}, + {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"}, + {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"}, ] [package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] [extras] ml = ["ngboost", "pytrends", "scikit-learn", "tensorflow"] @@ -6453,4 +6581,4 @@ viz = ["arviz", "matplotlib", "plotly"] [metadata] lock-version = "2.0" python-versions = ">=3.9,<3.11" -content-hash = "7b53faf992c85b2534c38b5195a315ee121225adabf16c3ef04b83e530d837be" +content-hash = "21c1210214a4d47462055aad3d2363098eadb56aeaa726110f5e16c90d33158e" diff --git a/pyproject.toml b/pyproject.toml index e6db038..29f5223 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -34,12 +34,12 @@ classifiers = [ #! Update me [tool.poetry.dependencies] python = ">=3.9,<3.11" - typer = {extras = ["all"], version = "^0.4.0"} rich = ">=12.4.4,<13" numpy = "^1.20.3" pandas = "^1.2" -scipy = "^1.8.0" +# issue with gaussian from signal +scipy = ">=1.8.0,<1.13" sshtunnel = "^0.4.0" SQLAlchemy = ">= 1.4.29,<2.0.0" psycopg2-binary = "^2.9.3" @@ -49,7 +49,7 @@ rioxarray = "^0.10.2" wget = "^3.2" tabulate = "^0.8.9" click = "^8.1.0" -PyYAML = "^5.0" +PyYAML = ">=5.0" pymc = "^4.2.0" loguru = "^0.6.0" sodapy = "^2.2.0" @@ -65,14 +65,15 @@ plotly = {version = "^5", optional = true} # [ml] pytrends = {version = "^4.7.3", optional = true} tensorflow = {version = "^2.5.0", optional = true} -scikit-learn = {version = "^1.0.2", optional = true} +# issue with alpha argument in the interval function +scikit-learn = {version = ">=1.0.2,<1.3", optional = true} ngboost = {version = "^0.3.13", optional = true} [tool.poetry.extras] ml = ["pytrends", "tensorflow", "scikit-learn", "ngboost"] viz = ["matplotlib", "plotly", "arviz"] -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] bandit = "^1.7.2" black = {version = "^22.1", allow-prereleases = true} darglint = "^1.8.1" @@ -93,11 +94,10 @@ Sphinx = "^4.4.0" myst-parser = "^0.17.0" sphinx-pyproject = "^0.1.0" nbsphinx = "^0.8.8" - -[tool.poetry.group.dev.dependencies] makim = "1.6.4" containers-sugar = "1.4.2" pysus = "^0.8.0" +docker = "<7" [tool.black] # https://github.com/psf/black