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@kevinlibuit kevinlibuit released this 27 Jul 15:08
· 334 commits to main since this release
v0.2
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Learn about vigilant mode.

Release to add the Kleborate and SerotypeFinder workflows

  • Available as tasks within the task_taxon_id.wdl file as well as stand-alone single-task workflows; both available on Terra via DockStore

Other Changes:

  • Version and analysis date captured for every workflow
  • Shovill task modified to include optional minimum contig length (default set to 200bp); this default setting is utilized in the Apollo_Illumina_PE workflow
  • White space inconsistencies addressed
  • Apollo_Illumina_PE output name changes:
    • predicted_genus → gamibit_genus
    • predicted_species → gamibit_species
  • Validation files directory created for local testing
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