diff --git a/tasks/taxon_id/task_gambit.wdl b/tasks/taxon_id/task_gambit.wdl index 9c253984d..05101263a 100644 --- a/tasks/taxon_id/task_gambit.wdl +++ b/tasks/taxon_id/task_gambit.wdl @@ -4,7 +4,7 @@ task gambit { input { File assembly String samplename - String docker = "us-docker.pkg.dev/general-theiagen/staphb/gambit:0.5.0" + String docker = "us-docker.pkg.dev/general-theiagen/staphb/gambit:1.0.0" File gambit_db_genomes = "gs://theiagen-public-files/terra/gambit_files/1.1.0/gambit-metadata-1.1-230417.gdb" File gambit_db_signatures = "gs://theiagen-public-files/terra/gambit_files/1.1.0/gambit-signatures-1.1-230417.gs" Int disk_size = 100 diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml index cc04a9958..5fa38e056 100644 --- a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml +++ b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml @@ -221,7 +221,7 @@ - path: miniwdl_run/call-clean_check_reads/work/_miniwdl_inputs/0/test_1.clean.fastq.gz - path: miniwdl_run/call-clean_check_reads/work/_miniwdl_inputs/0/test_2.clean.fastq.gz - path: miniwdl_run/call-gambit/command - md5sum: ee3f5f8694857e5de166a905b163e155 + md5sum: eeec5cfb3590f2bea525d5eec943d440 - path: miniwdl_run/call-gambit/inputs.json contains: ["assembly", "fasta", "samplename", "test"] - path: miniwdl_run/call-gambit/outputs.json @@ -235,9 +235,9 @@ - path: miniwdl_run/call-gambit/work/CLOSEST_DISTANCE - path: miniwdl_run/call-gambit/work/DATE - path: miniwdl_run/call-gambit/work/GAMBIT_DB_VERSION - md5sum: fcc8f3e34197b01a79929281c2bc93e6 + md5sum: 9b822b93497f0e02e1ef00f60db5850e - path: miniwdl_run/call-gambit/work/GAMBIT_VERSION - md5sum: f04975119234de325222289d81748e6d + md5sum: 42a2713399a2aea74a7cb6889caf3fdb - path: miniwdl_run/call-gambit/work/MERLIN_TAG md5sum: d4cd0dabcf4caa22ad92fab40844c786 - path: miniwdl_run/call-gambit/work/NEXT_TAXON @@ -626,7 +626,7 @@ - path: miniwdl_run/wdl/tasks/task_versioning.wdl md5sum: c178145bad99e3858a1327b3774177f3 - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl - md5sum: 21bf3c68afcc1c3bc8e70503d77911b7 + md5sum: 08987d952c67c6ff6debf6898af15f9a - path: miniwdl_run/wdl/tasks/taxon_id/task_kraken2.wdl md5sum: f06823a409a087441c8e70e46f7dfc29 - path: miniwdl_run/wdl/tasks/taxon_id/task_midas.wdl diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml index e8d97318d..dcb4661b5 100644 --- a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml +++ b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml @@ -218,7 +218,7 @@ md5sum: 32c0be4fb7f3030bf9c74c0a836d4f2e - path: miniwdl_run/call-clean_check_reads/work/_miniwdl_inputs/0/test_1.clean.fastq.gz - path: miniwdl_run/call-gambit/command - md5sum: ee3f5f8694857e5de166a905b163e155 + md5sum: eeec5cfb3590f2bea525d5eec943d440 - path: miniwdl_run/call-gambit/inputs.json contains: ["assembly", "fasta", "samplename", "test"] - path: miniwdl_run/call-gambit/outputs.json @@ -232,9 +232,9 @@ - path: miniwdl_run/call-gambit/work/CLOSEST_DISTANCE - path: miniwdl_run/call-gambit/work/DATE - path: miniwdl_run/call-gambit/work/GAMBIT_DB_VERSION - md5sum: fcc8f3e34197b01a79929281c2bc93e6 + md5sum: 9b822b93497f0e02e1ef00f60db5850e - path: miniwdl_run/call-gambit/work/GAMBIT_VERSION - md5sum: f04975119234de325222289d81748e6d + md5sum: 42a2713399a2aea74a7cb6889caf3fdb - path: miniwdl_run/call-gambit/work/MERLIN_TAG md5sum: d4cd0dabcf4caa22ad92fab40844c786 - path: miniwdl_run/call-gambit/work/NEXT_TAXON @@ -594,7 +594,7 @@ - path: miniwdl_run/wdl/tasks/task_versioning.wdl md5sum: c178145bad99e3858a1327b3774177f3 - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl - md5sum: 21bf3c68afcc1c3bc8e70503d77911b7 + md5sum: 08987d952c67c6ff6debf6898af15f9a - path: miniwdl_run/wdl/tasks/taxon_id/task_kraken2.wdl md5sum: f06823a409a087441c8e70e46f7dfc29 - path: miniwdl_run/wdl/tasks/taxon_id/task_midas.wdl