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Add iqtree model used field to augur workflow documentation
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Michal-Babins committed Nov 12, 2024
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Expand Up @@ -290,6 +290,7 @@ The Nextstrain team hosts documentation surrounding the Augur workflow → Auspi
| auspice_input_json | File | JSON file used as input to Auspice |
| combined_assemblies | File | Concatenated FASTA file containing all samples |
| distance_tree | File | The distance tree created in Newick (.nwk) format |
| iqtree_model_used | String | The iqtree model used during augur tree |
| keep_list | File | A list of samples included in the phylogenetic tree |
| metadata_merged | File | Tab-delimited text file of the merged augur_metadata input files from all samples |
| snp_matrix | File | The SNP distance matrix for all samples used in the phylogenetic tree |
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