diff --git a/docs/workflows/phylogenetic_construction/augur.md b/docs/workflows/phylogenetic_construction/augur.md index 7ccf78d56..7e885d945 100644 --- a/docs/workflows/phylogenetic_construction/augur.md +++ b/docs/workflows/phylogenetic_construction/augur.md @@ -290,6 +290,7 @@ The Nextstrain team hosts documentation surrounding the Augur workflow → Auspi | auspice_input_json | File | JSON file used as input to Auspice | | combined_assemblies | File | Concatenated FASTA file containing all samples | | distance_tree | File | The distance tree created in Newick (.nwk) format | +| iqtree_model_used | String | The iqtree model used during augur tree | | keep_list | File | A list of samples included in the phylogenetic tree | | metadata_merged | File | Tab-delimited text file of the merged augur_metadata input files from all samples | | snp_matrix | File | The SNP distance matrix for all samples used in the phylogenetic tree |