diff --git a/docs/workflows/standalone/dorado_basecalling.md b/docs/workflows/standalone/dorado_basecalling.md index 30a9d2d5c..20daf1461 100644 --- a/docs/workflows/standalone/dorado_basecalling.md +++ b/docs/workflows/standalone/dorado_basecalling.md @@ -12,17 +12,18 @@ The Dorado Basecalling workflow is used to convert Oxford Nanopore `POD5` sequen ### Model Type Selection -Users can configure the basecalling model by setting the dorado_model input parameter: +Users can configure the basecalling model by setting the `dorado_model` input parameter: Default Model: "sup" (super accuracy) is used unless overridden by the user. Manual Model Input: Users can specify the full path or name of a specific model (e.g., dna_r10.4.1_e8.2_400bps_hac@v4.2.0). Automatic Detection: When set to sup, hac, or fast, Dorado will automatically select the appropriate model version if available. -- **Model Type (sup):** (super accuracy) The most accurate model, recommended for critical applications requiring the highest basecall accuracy. It is the slowest of the three model types. +- **Model Type (sup):** (Super Accuracy) The most accurate model, recommended for critical applications requiring the highest basecall accuracy. It is the slowest of the three model types. - **Model Type (hac):** (High Accuracy) A balance between speed and accuracy, recommended for most users. Provides accurate results faster than `sup` but less accurate than `sup`. - **Model Type (fast):** (Fast Model) The fastest model, recommended when speed is prioritized over accuracy, such as for initial analyses or non-critical applications. ### Example Manual Models: + - `dna_r10.4.1_e8.2_400bps_sup@v4.2.0` - `dna_r10.4.1_e8.2_400bps_hac@v4.2.0` - `dna_r10.4.1_e8.2_400bps_fast@v4.2.0`