From 3e990e6364e4fac816a1a096e9fbd4d2372fe807 Mon Sep 17 00:00:00 2001
From: frankambrosio3 <frank.ambrosio@theiagen.com>
Date: Fri, 30 Dec 2022 20:21:49 +0000
Subject: [PATCH] spacing

---
 tasks/task_nullarbor.wdl | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/tasks/task_nullarbor.wdl b/tasks/task_nullarbor.wdl
index de17070c2..3912216f9 100644
--- a/tasks/task_nullarbor.wdl
+++ b/tasks/task_nullarbor.wdl
@@ -70,14 +70,14 @@ task nullarbor_tsv {
     done
     # Run Nullarbor on the input assembly with the --all flag
     nullarbor.pl \
-        --name ~{run_name} \
-        --ref ~{ref_genome} \
-        --input nullarbor_input.tsv \
-        --outdir nullarbor_outdir \
-        --assembler ~{assembler} \
-        --treebuilder ~{tree_builder} \
-        --taxoner ~{taxoner} \
-        --verbose
+      --name ~{run_name} \
+      --ref ~{ref_genome} \
+      --input nullarbor_input.tsv \
+      --outdir nullarbor_outdir \
+      --assembler ~{assembler} \
+      --treebuilder ~{tree_builder} \
+      --taxoner ~{taxoner} \
+      --verbose
     #Run makefile
     make preview -C nullarbor_outdir/
     nice make all -j 2 -l 4 -C nullarbor_outdir/ 2>&1 | tee -a nullarbor_outdir/nullarbor.log