From 4b6d267e3ddbdd1242930bbddeb42f9140986fcf Mon Sep 17 00:00:00 2001 From: cimendes Date: Fri, 25 Oct 2024 09:56:53 +0000 Subject: [PATCH] krakren -> kraken2 --- workflows/theiameta/wf_theiameta_illumina_pe.wdl | 8 ++++---- workflows/theiaprok/wf_theiaprok_ont.wdl | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/workflows/theiameta/wf_theiameta_illumina_pe.wdl b/workflows/theiameta/wf_theiameta_illumina_pe.wdl index 51f1a0054..f86f8d48e 100644 --- a/workflows/theiameta/wf_theiameta_illumina_pe.wdl +++ b/workflows/theiameta/wf_theiameta_illumina_pe.wdl @@ -45,10 +45,10 @@ workflow theiameta_illumina_pe { read1 = read1, read2 = read2, workflow_series = "theiameta", - kraken_db = kraken2_db, - call_kraken = false, - kraken_disk_size = 100, - kraken_memory = 8 + kraken2_db = kraken2_db, + call_kraken2 = false, + kraken2_disk_size = 100, + kraken2_memory = 8 } call kraken_task.kraken2_standalone as kraken2_clean { input: diff --git a/workflows/theiaprok/wf_theiaprok_ont.wdl b/workflows/theiaprok/wf_theiaprok_ont.wdl index 82688368e..644bc2b7a 100644 --- a/workflows/theiaprok/wf_theiaprok_ont.wdl +++ b/workflows/theiaprok/wf_theiaprok_ont.wdl @@ -584,7 +584,7 @@ workflow theiaprok_ont { String? kraken2_version = read_qc_trim.kraken2_version String? kraken2_report = read_qc_trim.kraken2_report String? kraken2_database = read_qc_trim.kraken2_database - String? kraken_docker = read_qc_trim.kraken2_docker + String? kraken2_docker = read_qc_trim.kraken2_docker # Read QC - rasusa outputs String? rasusa_version = read_qc_trim.rasusa_version # Read QC - tiptoft outputs