From 5f37276c6e9f7eca668445d24559d5ccf7d0ffd2 Mon Sep 17 00:00:00 2001 From: Curtis Kapsak Date: Wed, 30 Oct 2024 14:50:48 +0000 Subject: [PATCH] update theiacov_clearlabs CI --- .../workflows/theiacov/test_wf_theiacov_clearlabs.yml | 10 ++++------ 1 file changed, 4 insertions(+), 6 deletions(-) diff --git a/tests/workflows/theiacov/test_wf_theiacov_clearlabs.yml b/tests/workflows/theiacov/test_wf_theiacov_clearlabs.yml index 599fec45e..0bc0af5fc 100644 --- a/tests/workflows/theiacov/test_wf_theiacov_clearlabs.yml +++ b/tests/workflows/theiacov/test_wf_theiacov_clearlabs.yml @@ -115,17 +115,16 @@ - path: miniwdl_run/call-fastq_scan_clean_reads/inputs.json contains: ["read1", "clearlabs"] - path: miniwdl_run/call-fastq_scan_clean_reads/outputs.json - contains: ["fastq_scan_se", "pipeline_date", "read1_seq"] + contains: ["fastq_scan_se", "read1_seq"] - path: miniwdl_run/call-fastq_scan_clean_reads/stderr.txt - path: miniwdl_run/call-fastq_scan_clean_reads/stderr.txt.offset - path: miniwdl_run/call-fastq_scan_clean_reads/stdout.txt - path: miniwdl_run/call-fastq_scan_clean_reads/task.log contains: ["wdl", "theiacov_clearlabs", "fastq_scan_clean_reads", "done"] - - path: miniwdl_run/call-fastq_scan_clean_reads/work/DATE - path: miniwdl_run/call-fastq_scan_clean_reads/work/READ1_SEQS md5sum: 097e79b36919c8377c56088363e3d8b7 - path: miniwdl_run/call-fastq_scan_clean_reads/work/VERSION - md5sum: 8e4e9cdfbacc9021a3175ccbbbde002b + md5sum: a59bb42644e35c09b8fa8087156fa4c2 - path: miniwdl_run/call-fastq_scan_clean_reads/work/_miniwdl_inputs/0/clearlabs_R1_dehosted.fastq.gz - path: miniwdl_run/call-fastq_scan_clean_reads/work/clearlabs_R1_dehosted_fastq-scan.json md5sum: 869dd2e934c600bba35f30f08e2da7c9 @@ -134,17 +133,16 @@ - path: miniwdl_run/call-fastq_scan_raw_reads/inputs.json contains: ["read1", "clearlabs"] - path: miniwdl_run/call-fastq_scan_raw_reads/outputs.json - contains: ["fastq_scan_se", "pipeline_date", "read1_seq"] + contains: ["fastq_scan_se", "read1_seq"] - path: miniwdl_run/call-fastq_scan_raw_reads/stderr.txt - path: miniwdl_run/call-fastq_scan_raw_reads/stderr.txt.offset - path: miniwdl_run/call-fastq_scan_raw_reads/stdout.txt - path: miniwdl_run/call-fastq_scan_raw_reads/task.log contains: ["wdl", "theiacov_clearlabs", "fastq_scan_raw_reads", "done"] - - path: miniwdl_run/call-fastq_scan_raw_reads/work/DATE - path: miniwdl_run/call-fastq_scan_raw_reads/work/READ1_SEQS md5sum: 097e79b36919c8377c56088363e3d8b7 - path: miniwdl_run/call-fastq_scan_raw_reads/work/VERSION - md5sum: 8e4e9cdfbacc9021a3175ccbbbde002b + md5sum: a59bb42644e35c09b8fa8087156fa4c2 - path: miniwdl_run/call-fastq_scan_raw_reads/work/_miniwdl_inputs/0/clearlabs.fastq.gz - path: miniwdl_run/call-fastq_scan_raw_reads/work/clearlabs_fastq-scan.json md5sum: 869dd2e934c600bba35f30f08e2da7c9