update CI

theiagen · Nov 7, 2024 · 74f1d56 · 74f1d56
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commit 74f1d56
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Showing 3 changed files with 9 additions and 9 deletions.
diff --git a/tests/workflows/theiacov/test_wf_theiacov_illumina_se.yml b/tests/workflows/theiacov/test_wf_theiacov_illumina_se.yml
@@ -74,7 +74,7 @@
     - path: miniwdl_run/call-read_QC_trim/call-fastq_scan_raw/work/VERSION
     # kraken2
     - path: miniwdl_run/call-read_QC_trim/call-kraken2_theiacov_raw/command
-      md5sum: ca22e45a62c5c26c4447cdafe75a26ab
+      md5sum: 3478232c364dc1cf01b6b0300400c26c
     - path: miniwdl_run/call-read_QC_trim/call-kraken2_theiacov_raw/inputs.json
       contains: ["read1", "samplename"]
     - path: miniwdl_run/call-read_QC_trim/call-kraken2_theiacov_raw/outputs.json
@@ -85,13 +85,13 @@
     - path: miniwdl_run/call-read_QC_trim/call-kraken2_theiacov_raw/task.log
       contains: ["wdl", "theiacov_illumina_se", "kraken2_theiacov_raw", "done"]
     - path: miniwdl_run/call-read_QC_trim/call-kraken2_theiacov_raw/work/PERCENT_HUMAN
-      md5sum: 1576d5d341223ea9d44b0b8a213bb9da
+      md5sum: 4fd4dcef994592f9865e9bc8807f32f4
     - path: miniwdl_run/call-read_QC_trim/call-kraken2_theiacov_raw/work/PERCENT_SC2
-      md5sum: 7cc2eb659e21f15fa902b11812eae1f6
+      md5sum: adbe14d7547234f3743f80907ed33179
     - path: miniwdl_run/call-read_QC_trim/call-kraken2_theiacov_raw/work/PERCENT_TARGET_ORGANISM
       md5sum: 68b329da9893e34099c7d8ad5cb9c940
     - path: miniwdl_run/call-read_QC_trim/call-kraken2_theiacov_raw/work/ERR6319327_kraken2_report.txt
-      md5sum: 9a089b8920e55c9cc7bc8cd7d18f9a8e
+      md5sum: cb58af9eb139d109b55ce65d6d2344d6
     # clean read screen
     - path: miniwdl_run/call-clean_check_reads/command
       md5sum: 80a361915a627e86743baacfc383b2b5

diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml
@@ -561,7 +561,7 @@
     - path: miniwdl_run/wdl/tasks/gene_typing/drug_resistance/task_resfinder.wdl
       md5sum: 27528633723303b462d095b642649453
     - path: miniwdl_run/wdl/tasks/gene_typing/variant_detection/task_snippy_variants.wdl
-      md5sum: 3b9e04569d7e856dcc649b7726b306b7
+      md5sum: 440a620a10ccdafe612f0b33ef05f86d
     - path: miniwdl_run/wdl/tasks/quality_control/read_filtering/task_bbduk.wdl
       md5sum: aec6ef024d6dff31723f44290f6b9cf5
     - path: miniwdl_run/wdl/tasks/quality_control/advanced_metrics/task_busco.wdl
@@ -625,7 +625,7 @@
     - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl
       md5sum: 2aa70eab24868920f6c28843dd3b5613
     - path: miniwdl_run/wdl/tasks/taxon_id/contamination/task_kraken2.wdl
-      md5sum: 0ea83681884800bda1e3c4e116f2b19d
+      md5sum: 73cf8b010232f2baa3d40967245e4b85
     - path: miniwdl_run/wdl/tasks/taxon_id/contamination/task_midas.wdl
       md5sum: 64caaaff5910ac0036e2659434500962
     - path: miniwdl_run/wdl/tasks/utilities/data_export/task_broad_terra_tools.wdl

diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml
@@ -526,7 +526,7 @@
     - path: miniwdl_run/wdl/tasks/gene_typing/drug_resistance/task_resfinder.wdl
       md5sum: 27528633723303b462d095b642649453
     - path: miniwdl_run/wdl/tasks/gene_typing/variant_detection/task_snippy_variants.wdl
-      md5sum: 3b9e04569d7e856dcc649b7726b306b7
+      md5sum: 440a620a10ccdafe612f0b33ef05f86d
     - path: miniwdl_run/wdl/tasks/quality_control/read_filtering/task_bbduk.wdl
       md5sum: aec6ef024d6dff31723f44290f6b9cf5
     - path: miniwdl_run/wdl/tasks/quality_control/advanced_metrics/task_busco.wdl
@@ -588,7 +588,7 @@
     - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl
       md5sum: 2aa70eab24868920f6c28843dd3b5613
     - path: miniwdl_run/wdl/tasks/taxon_id/contamination/task_kraken2.wdl
-      md5sum: 0ea83681884800bda1e3c4e116f2b19d
+      md5sum: 73cf8b010232f2baa3d40967245e4b85
     - path: miniwdl_run/wdl/tasks/taxon_id/contamination/task_midas.wdl
       md5sum: 64caaaff5910ac0036e2659434500962
     - path: miniwdl_run/wdl/tasks/utilities/data_export/task_broad_terra_tools.wdl
@@ -598,6 +598,6 @@
     - path: miniwdl_run/wdl/workflows/utilities/wf_merlin_magic.wdl
       md5sum: ea5cff6eff8c2c42046cf2eae6f16b6f
     - path: miniwdl_run/wdl/workflows/utilities/wf_read_QC_trim_se.wdl
-      md5sum: d11bfe33fdd96eab28892be5a01c1c7d
+      md5sum: 9bb3f6b31989f9fa66f5f1602c60f3d8
     - path: miniwdl_run/workflow.log
       contains: ["wdl", "theiaprok_illumina_se", "NOTICE", "done"]