From 93be00c511f291cb7826820596c073d55140f0c4 Mon Sep 17 00:00:00 2001 From: Curtis Kapsak Date: Mon, 4 Nov 2024 16:45:07 +0000 Subject: [PATCH] added 4 fastq-scan JSON outputs to theiaeuk_illumina_pe wf --- workflows/theiaeuk/wf_theiaeuk_illumina_pe.wdl | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/workflows/theiaeuk/wf_theiaeuk_illumina_pe.wdl b/workflows/theiaeuk/wf_theiaeuk_illumina_pe.wdl index 67c5c5464..3e792345d 100644 --- a/workflows/theiaeuk/wf_theiaeuk_illumina_pe.wdl +++ b/workflows/theiaeuk/wf_theiaeuk_illumina_pe.wdl @@ -208,6 +208,10 @@ workflow theiaeuk_illumina_pe { Int? fastq_scan_num_reads_clean1 = read_QC_trim.fastq_scan_clean1 Int? fastq_scan_num_reads_clean2 = read_QC_trim.fastq_scan_clean2 String? fastq_scan_num_reads_clean_pairs = read_QC_trim.fastq_scan_clean_pairs + File? fastq_scan_raw1_json = read_QC_trim.fastq_scan_raw1_json + File? fastq_scan_raw2_json = read_QC_trim.fastq_scan_raw2_json + File? fastq_scan_clean1_json = read_QC_trim.fastq_scan_clean1_json + File? fastq_scan_clean2_json = read_QC_trim.fastq_scan_clean2_json # Read QC - trimmomatic outputs String? trimmomatic_version = read_QC_trim.trimmomatic_version String? trimmomatic_docker = read_QC_trim.trimmomatic_docker