Handle empty substitution model case in augur_tree task

theiagen · Nov 12, 2024 · a9a4e65 · a9a4e65
1 parent 2ac0c0d
commit a9a4e65
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/tasks/phylogenetic_inference/augur/task_augur_tree.wdl b/tasks/phylogenetic_inference/augur/task_augur_tree.wdl
@@ -39,6 +39,8 @@ task augur_tree {
         MODEL="~{substitution_model}"
       fi
       echo "$MODEL" > FINAL_MODEL.txt
+    else
+      echo "" > FINAL_MODEL.txt
     fi
   >>>