add back vadr_num_alerts string output to theiacov_fasta workflow (#307)

theiagen · Jan 17, 2024 · c3f3b70 · c3f3b70
1 parent e37f822
commit c3f3b70
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/workflows/theiacov/wf_theiacov_fasta.wdl b/workflows/theiacov/wf_theiacov_fasta.wdl
@@ -157,6 +157,7 @@ workflow theiacov_fasta {
     File?  vadr_alerts_list = vadr.alerts_list
     String? vadr_docker = vadr.vadr_docker
     File? vadr_fastas_zip_archive = vadr.vadr_fastas_zip_archive
+    String? vadr_num_alerts = vadr.num_alerts
     # QC_Check Results
     String? qc_check = qc_check_phb.qc_check
     File? qc_standard = qc_check_phb.qc_standard