diff --git a/tasks/taxon_id/contamination/task_kraken2.wdl b/tasks/taxon_id/contamination/task_kraken2.wdl index 726d9d603..4a43106f6 100644 --- a/tasks/taxon_id/contamination/task_kraken2.wdl +++ b/tasks/taxon_id/contamination/task_kraken2.wdl @@ -256,7 +256,7 @@ task kraken2_parse_classified { File kraken_report = "~{samplename}.report_parsed.txt" Float percent_human = read_float("PERCENT_HUMAN") String percent_sc2 = read_string("PERCENT_SC2") - String percent_target_organism = read_string("PERCENT_TARGET_ORG") + String percent_target_organism = read_string("PERCENT_TARGET_ORGANISM") String? kraken_target_organism = target_organism } runtime {