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sage-wright committed Nov 14, 2024
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2 changes: 1 addition & 1 deletion main/search/search_index.json
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96 changes: 48 additions & 48 deletions main/sitemap.xml
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9 changes: 7 additions & 2 deletions main/workflows/phylogenetic_construction/augur/index.html
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Expand Up @@ -5385,7 +5385,7 @@ <h4 id="augur-inputs">Augur Inputs<a class="headerlink" href="#augur-inputs" tit
<td>augur_tree</td>
<td><strong>substitution_model</strong></td>
<td>String</td>
<td>The substitution model to use; only available for iqtree. Specify "auto" to run ModelTest; options: "GTR"</td>
<td>The substitution model to use; only available for iqtree. Specify "auto" to run ModelTest; model options can be found <a href="http://www.iqtree.org/doc/Substitution-Models">here</a></td>
<td>GTR</td>
<td>Optional</td>
</tr>
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<td>A FASTA file of the aligned genomes</td>
</tr>
<tr>
<td>augur_iqtree_model_used</td>
<td>String</td>
<td>The iqtree model used during augur tree</td>
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<tr>
<td>augur_phb_analysis_date</td>
<td>String</td>
<td>The date the analysis was run</td>
Expand Down Expand Up @@ -5690,7 +5695,7 @@ <h3 id="references">References<a class="headerlink" href="#references" title="Pe
<span class="md-icon" title="Last update">
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</span>
<span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-iso_date">2024-10-21</span>
<span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-iso_date">2024-11-14</span>
</span>


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