From d523f83159204006f2db1b67fd3071efbd3b69a5 Mon Sep 17 00:00:00 2001
From: fraser-combe <frascom@hotmail.com>
Date: Thu, 17 Oct 2024 09:45:40 -0500
Subject: [PATCH] update qc metrics combined so output is a tsv file anme in
 snippytree wf

---
 workflows/phylogenetics/wf_snippy_tree.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflows/phylogenetics/wf_snippy_tree.wdl b/workflows/phylogenetics/wf_snippy_tree.wdl
index 6c6bc5cfb..b64ef5eba 100644
--- a/workflows/phylogenetics/wf_snippy_tree.wdl
+++ b/workflows/phylogenetics/wf_snippy_tree.wdl
@@ -184,7 +184,7 @@ workflow snippy_tree_wf {
     call shared_variants_task.shared_variants {
       input:
         concatenated_variants = concatenate_variants.concatenated_variants, 
-        concatenated_file_name = tree_name_updated
+        concatenated_file_name = tree_name_updated + "_combined_qc_metrics.tsv",
     }
   }
   if (defined(snippy_variants_qc_metrics)) {